How to predict marine biodiversity

26 07 2011

One of the most important components of conservation ecology is arguably the focus on robust methods to predict ‘biodiversity’. This covers everything from detection issues (whether or not a species is in a particular area), species distribution models (to predict where a species should be given habitat and/or physical attributes), climate change predictions, to reserve design algorithms (to assess whether we are protecting what we think we are protecting).

It might seem a bit strange to the uninitiated that we have to spend so much time trying to figure out what’s there. Surely, one just goes to the area of interest and does a few quick surveys? Wouldn’t that be lovely; the truth is that most species are, in fact, rare, and the massive areas we must usually survey tend to preclude complete coverage. This is why experimental design and statistical techniques are so advanced in our discipline – to account for the probability of missing what’s actually there, and to estimate what should be in areas we haven’t even looked in.

Read the rest of this entry »

Drive the future of biodiversity research

20 07 2011

My colleague, Professor Alan Cooper of the Australian Centre for Ancient DNA, has a few funky PhD positions available in high-tech biodiversity applications.

We are looking for interested graduate students, who are highly motivated and enjoy independent and unusual research in the general areas below. An interest in evolution and natural history are key requirements, and a background in any of the following would be useful: evolution, genetics, molecular biology, chemistry/biochemistry and environmental science.

Environmental Genomics

New genomic approaches for biodiversity studies of environmental samples: a number of PhD positions are available in a large-scale project to apply high throughput sequencing approaches to the analysis of environmental samples and develop a new range of methods to perform biodiversity surveys, taxonomic discovery, and environmental impact reports. The project will employ multiplexed PCR, 2nd/3rd-gen sequencing, bioinformatics and Phylogenetics to develop novel systems for rapid and accurate biodiversity assessment. Key topics within the project are the analysis of natural and re-use water supplies, monitoring presence and abundance of threatened species and Australian native grasses. A strong molecular biology and/or bioinformatics background is required. The project is a AU$1M Australian Research Council-industry partnership. Read the rest of this entry »

Australian ecologists support carbon tax

18 07 2011

© Herald Sun

Last week I came across a report that 60 % of economists support the newly proposed Australian carbon tax initiative, and that most believed the Coalition’s plan was inferior and would likely be more costly.

I thought that it would be good to survey ecologists on this very same issue because we are the people dealing with the fall-out of climate change to natural systems, and we are the group communicating it and its consequences to the greater public. Climate change effects on the Australian biota are already being witnessed, and if we don’t take the lead in this over-populated world of myopic, self-interested growth addicts, it’s our children who will suffer most.

Usually, ecologists and economists tend to disagree on major policies because of the general view that development is incompatible with functioning ecosystems; however in this case, it’s telling that the two seem to agree. If economists and ecologists together support something, it’s probably a good idea to give it a go. Read the rest of this entry »

Do ecologists support Australia’s new carbon tax?

13 07 2011

Today on The Conversation, it was reported that 60 % of 145 economists surveyed support Australia’s new Carbon Tax scheme.

I am wondering what kind of support there is for it out there amongst ecologists. If you are one, please complete the following short survey by clicking here.

I’ll post the results in a few days.

CJA Bradshaw

Deforesting and reforesting Australia

13 07 2011

A couple of weeks ago we (Andy Lowe and I) did a small interview on ABC television about the current status of Australia forests, followed by a discussion regarding our recently funded Australian Research Council Linkage Project Developing best-practice approaches for restoring forest ecosystems that are resilient to climate change. Just in case you didn’t see it, I’ve managed to upload a copy of the piece to and reproduce it here:

I’m actually in the process of writing a paper on all this for a special issue of Journal of Plant Ecology (that is nearly already overdue!), but here are a few facts for you in the interim:

  • Australian eucalypt forests are globally unique, with one of the longest evolutionary histories among the world’s forests
  • Australia has about 147 million ha of native forest remaining, and about 2 million ha of plantations Read the rest of this entry »

Life, death and Linneaus

9 07 2011

Barry Brook (left) and Lian Pin Koh (right) attacking Fangliang He (centre). © CJA Bradshaw

I’m sitting in the Brisbane airport contemplating how best to describe the last week. If you’ve been following my tweets, you’ll know that I’ve been sequestered in a room with 8 other academics trying to figure out the best ways to estimate the severity of the Anthropocene extinction crisis. Seems like a pretty straight forward task. We know biodiversity in general isn’t doing so well thanks to the 7 billion Homo sapiens on the planet (hence, the Anthropo prefix) – the question though is: how bad?

I blogged back in March that a group of us were awarded a fully funded series of workshops to address that question by the Australian Centre for Ecological Synthesis and Analysis (a Terrestrial Ecosystem Research Network facility based at the University of Queensland), and so I am essentially updating you on the progress of the first workshop.

Before I summarise our achievements (and achieve, we did), I just want to describe the venue. Instead of our standard, boring, windowless room in some non-descript building on campus, ACEAS Director, Associate Professor Alison Specht, had the brilliant idea of putting us out away from it all on a beautiful nature-conservation estate on the north coast of New South Wales.

What a beautiful place – Linneaus Estate is a 111-ha property just a few kilometres north of Lennox Head (about 30 minutes by car south of Byron Bay) whose mission is to provide a sustainable living area (for a very lucky few) while protecting and restoring some pretty amazing coastal habitat along an otherwise well-developed bit of Australian coastline. And yes, it’s named after Carl Linnaeus. Read the rest of this entry »

Taxonomy in the clouds

4 07 2011

Another post (see previous here, here and here) by my aspiring science-communicator PhD student, Salvador Herrando-Pérez.

Taxonomy uses rigorous rules of nomenclature to classify living beings, so every known species has a given ‘name’ and ‘surname’. The revision of certain taxonomic groups (particularly through genetic analyses) is favouring the proliferation of nominally new species, often propelled by virtue of their charisma and conservation status.

In secondary school, most of my classmates associated the subject ‘Biology’ with unpronounceable Latin taxonomic names, with which all known living beings are branded — ‘Canis lupus’ reads the identity card of humanity’s best friend. When the Swedish monk Carl Linnaeus proposed such binomial nomenclature, he could hardly imagine that, two hundred years later, his terminology would underpin national and transnational budgets for species conservation. Taxonomic nomenclature allows the classification of species into clusters of the same kind (e.g., diatoms, amanitas, polychaetes, skinks), and the calculation of an indispensable figure for conservation purposes: how many species are there at a given location, range, country, continent, or the entire planet?

Traditionally, taxonomists described species by examining their (external and internal) morphological features, the widest consensus being that two individuals of different species could not hybridise. However, a practical objection to that thinking was that if, for instance, an ocean separated two leopard populations, ethics should prevent us from bringing them in contact only to check if they produce fertile offspring, hence justifying a common-species status. Genetics currently provides a sort of ‘remote check’.

New species, new names

Over the last three decades, the boom of genetics and the global modernisation of environmental policies have fostered alternative criteria to differentiate species, populations, and even individuals. As a result, experts have created a colourful lexicon to label management or conservation units or new taxonomical categories such as that of a subspecies1, e.g., Canis lupus dingo for the wild Australian dog (dingo). These changes have shaken the foundations of taxonomy because several definitions of species (biological, phylogenetic, evolutionary) are forced to live under the umbrella of a common nomenclature. Read the rest of this entry »