Young red kangaroos grow up quickly where hungry dingoes lurk

2 06 2023

We’ve just published a new paper showing that young red kangaroos (Osphranter rufus) protected by the dingo-proof fence take more time to grow up than their counterparts on the other side, who quickly outgrow the risk of being a dingo’s next meal.

© M.S.Y. Lee

Our Flinders University/ARC Centre of Excellence for Australian Biodiversity and Heritage study shows that protected red kangaroos south of the dingo fence have a slower growth rate than those living north of the fence, where they are exposed to the dingo.

Published in the Journal of Mammalogy, our article led by Rex Mitchell also revealed that there are more young and female kangaroos inside the dingo-proof fence, showing that the fence impacts on different aspects of the red kangaroo’s life cycle.

Red kangaroos are one of the dingo’s favourite prey species, so it’s not surprising to find fewer of the smaller females and younger animals when there are more dingoes around. However, we didn’t expect that young animals inside the fence were lighter and smaller than those outside the fence. Read the rest of this entry »





An unexpected journey (of eels)

29 05 2023

The way that eels migrate along rivers and seas is mesmerising. There has been scientific agreement since the turn of the 20th Century that the Sargasso Sea is the breeding home to the sole European species. But it has taken more than two centuries since Carl Linnaeus gave this snake-shaped fish its scientific name before an adult was discovered in the area where they mate and spawn.


Even among nomadic people, the average human walks no more than a few dozen kilometres in a single trip. In comparison, the animal kingdom is rife with migratory species that traverse continents, oceans, and even the entire planet (1).

The European eel (Anguilla anguilla) is an outstanding example. Adults migrate up to 5000 km from the rivers and coastal wetlands of Europe and northern Africa to reproduce, lay their eggs, and die in the Sargasso Sea — an algae-covered sea delimited by oceanic currents in the North Atlantic.

The European eel (Anguilla Anguilla) is an omnivorous fish that migrates from European and North African rivers to the Sargasso Sea to mate and die (18). Each individual experiences 4 distinct developmental phases, which look so different that they have been described as three distinct species (19): A planktonic, leaf-like larva (i lecocephalus phase) emerges from each egg and takes up to 3 years to cross the Atlantic. Off the Afro-European coasts, the larva transforms into a semi-transparent tiny eel (ii glass phase) that enters wetlands and estuaries, and travels up the rivers as it gains weight and pigment (iii yellow phase). They remain there for up to 20 years, rarely growing larger than 1 m in length and 4 kg in weight (females are larger than males) — see underwater footage here and here. Sexual maturity ultimately begins to adjust to the migration to the sea: a darker, saltier, and deeper environment than the river. Their back and belly turn bronze and silver (iv silver phase), respectively, the eyes increase in size and the number of photoreceptors multiplies (function = submarine vision), the stomach shrinks and loses its digestive function, the walls of the swim bladder thicken (function = floating in the water column), and the fat content of tissues increases by up to 30% of body weight (function = fuel for transoceanic travelling). And finally, the reproductive system will gradually develop while eels navigate to the Sargasso Sea — a trip during which they fast. Photos courtesy of Sune Riis Sørensen (2-day embryo raised at www.eel-hatch.dk and leptocephalus from the Sargasso Sea) and Lluís Zamora (Ter River, Girona, Spain: glass eels in Torroella de Montgrí, 70 cm yellow female in Bonmatí, and 40 cm silver male showing eye enlargement in Bescanó). Eggs and sperm are only known from in vitro fertilisation in laboratories and fish farms (20).

As larvae emerge, they drift with the prevailing marine currents over the Atlantic to the European and African coasts (2). The location of the breeding area was unveiled in the early 20th Century as a result of the observation that the size of the larvae caught in research surveys gradually decreased from Afro-European land towards the Sargasso Sea (3, 4). Adult eels had been tracked by telemetry in their migration route converging on the Azores Archipelago (5), but none had been recorded beyond until recently.

Crossing the Atlantic

To complete this piece of the puzzle, Rosalind Wright and collaborators placed transmitters in 21 silver females and released them in the Azores (6). These individuals travelled between 300 and 2300 km, averaging 7 km each day. Five arrived in the Sargasso Sea, and one of them, after a swim of 243 days (from November 2019 to July 2020), reached what for many years had been the hypothetical core of the breeding area (3, 4). It is the first direct record of a European eel ending its reproductive journey.

Eels use the magnetic fields in their way back to the Sargasso Sea and rely on an internal compass that records the route they made as larvae (7). The speed of navigation recorded by Wright is slower than in many long-distance migratory vertebrates like birds, yet it is consistent across the 16 known eel species (8).

Telemetry (6) and fisheries (14) of European eel (Anguilla anguilla). Eel silhouettes indicate the release point of 21 silver females in Azores in 2018 (orange) and 2019 (yellow), the circles show the position where their transmitters stopped sending signals, and the grey background darkens with water depth. The diagrams display the distance travelled and the speed per eel, where the circle with bold border represents the female that reached the centre of the hypothetical spawning area in the Sargasso Sea (dashed lines in the map) (3). Blue, green and pink symbols indicate the final location of eels equipped with teletransmitters in previous studies, finding no individual giving location signals beyond the Azores Archipelago (6). The barplot shows commercial catches (1978-2021) of yellow+silver eels in those European countries with historical landings exceeding 30,000 t (no data available for France prior to 1986), plus Spain (6120 t from 1951) — excluding recreational fishery and farming which, in 2020, totalled 300 and 4600 t, respectively (14). Red circles represent glass-eel catches added up for France (> 90% of all-country landings), Great Britain, Portugal, and Spain. Catches have kept declining since the 1980s. One kg of glass eels contains some 3000 individuals, so the glass-eel fishery has a far greater impact on stocks than the adult fishery.

Wright claimed that, instead of swiftly migrating for early spawning, eels engage in a protracted migration at depth. This behaviour serves to conserve their energy and minimises the risk of dying (6). The delay also allows them to reach full reproductive potential since, during migration, eels stop eating and mobilise all their resources to swim and reproduce (9).

Other studies have revealed that adults move in deep waters in daylight but in shallow waters at night, and that some individuals are faster than others (3 to 47 km per day) (5). Considering that (i) this fish departs Europe and Africa between August and December and (ii) spawning occurs in the Sargasso Sea from December to May, it is unknown whether different individuals might breed 1 or 2 years after they begin their oceanic migration.

Management as complex as life itself

The European eel started showing the first signs of decline at the end of the 19th Century (10, 11). In 2008, the species was listed as Critically Endangered by the IUCN, and its conservation status has since remained in that category — worse than that of the giant panda (Ailuropoda melanoleuca) or the Iberian lynx (Lynx pardinus).

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New job posting: Research Fellow in Eco-Epidemiology & Human Ecology

11 05 2023

We are currently seeking a Research Fellow in Eco-epidemiology/Human Ecology to join our team at Flinders University.

The successful candidate will develop spatial eco-epidemiological models for the populations of Indigenous Australians exposed to novel diseases upon contact with the first European settlers in the 18th Century. The candidate will focus on:

  • developing code to model how various diseases spread through and modified the demography of the Indigenous population after first contact with Europeans;
  • contributing to the research project by working collaboratively with the research team to deliver key project milestones;
  • independently contributing to ethical, high-quality, and innovative research and evaluation through activities such as scholarship, publishing in recognised, high-quality journals and assisting the preparation and submission of bids for external research funding; and
  • supervising of Honours and postgraduate research projects.


The ideal candidate will have advanced capacity to develop eco-epidemiological models that expand on the extensive human demographic models already developed under the auspices of the Australian Research Council Centre of Excellence for Australian Biodiversity and Heritage, of which Flinders is the Modelling Node. To be successful in this role, the candidate will demonstrate experience in coding advanced spatial models including demography, epidemiology, and ecology. The successful candidate will also demonstrate:

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Some like it hot

6 03 2023

Wildfires transform forests into mosaics of vegetation. What, where, and which plants thrive depends on when and how severely a fire affects different areas of a forest. Such heterogeneity in the landscape is essential for animal species that benefit from fire like woodpeckers.

The black-backed woodpecker (Picoides arcticus) lives in the coniferous forests of North America’s boreal-Mediterranean region. Thanks to a powerful and sharp bill, this bird can excavate nests inside the trunks of (mainly dead) trees, and those cavities will be re-used later by many species of birds, mammals, and invertebrates in fire-prone landscapes (22). The images show a male with the characteristic black plumage of his back that serves as camouflage against the dark bark of a dead tree three years after a wildfire in Montana (USA). Being omnivores, the diet of this bird largely relies on the larvae of woodboring coleoptera like jewell and longhorn beetles. These insects are abundant post-fire, the champion being the fire beetle (Melanophila spp.). The thorax of fire beetles is equipped with infrared-light receptors that can detect a wildfire from tens of kilometres away (23). These fascinating little beasts are the first to arrive at a burned forest and, of course, woodpeckers follow soon after. The preference of the blackbacked woodpecker for burned forests and their cryptic feathers and pyrophilic diet reflect a long evolutionary history in response to fires. Courtesy of Richard Hutto.

Anyone raised in rural areas will have vivid recollections of wildfires: the thick, ashy smell, the overcast sky on a sunny day, and the purring of aerial firefighters dropping water from their hanging tanks. The reality is that wildfires are natural events that shape biodiversity and ecosystem function (1) — to the extent that fire is intimately linked to the appearance and evolution of terrestrial plants (2). Since the Palaeolithic, our own species has used fire at will, to cook, hunt, melt metals, open cropland or paths, or tell stories in front of a hearth (3).

Where there are regular wildfires (fire-prone ecosystems), different areas of the landscape burn in different seasons and years under different weather patterns. Therefore, each region has a unique fire biography in terms of how frequently, how much, and how long ago wildfires occurred. All those factors interact will one another and with topography.

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Better codes of practice for control of feral animals

24 02 2023

From time to time I turn my research hand to issues of invasive species control, for example, from manipulating pathogens to control rabbits, to island eradication of feral cats and pigs, to effective means to control feral deer.

Not only do invasive species cost well over $1.7 trillion (yes, that’s trillion, with 12 zeros) each year in terms of damage and control (a minimum of $25 billion per year in Australia alone), they are one of the main drivers of biodiversity loss globally. So, if you baulk at lethal forms of control of invasive species, you are simultaneously stating that you’re fine with the torture and death of millions (if not, billions) of native animals each year.

Thanks to the collaborative and evidence-driven foresight of my colleagues at PIRSA Biosecurity and Landscape Boards, I was recently involved in more research examining the most efficient, cost-effective, and humane ways to cull feral dear in South Australia. The resulting paper is now in review in NeoBiota, but we have also posted a pre-print of the article.

Feral deer are a real problem in Australia, and South Australia is no exception. With six species of feral deer in the country already (fallow Dama dama, red Cervus elaphus, hog Axis porcinus, chital A. axis), rusa C. timorensis, and sambar Rusa unicolor deer), fallow deer are the most abundant and widespread. These species are responsible for severe damage to native plants, competition with native animals, economic losses to primary industries (crops, pastures, horticulture, plantations), and human safety risks from vehicle collisions. Feral deer are also reservoirs and vectors of endemic animal diseases and have the potential to transmit exotic animal diseases such as foot-and-mouth. If left uncontrolled, within 30 years the economic impacts of feral deer could reach billions of dollars annually.

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Keeping babies alive will lower population growth

23 02 2023

We’ve just published a paper in PLOS ONE showing high infant mortality rates are contributing to an incessant rise of the global human population, which supports arguments for greater access to contraception and family planning in low- and middle-income nations.

In collaboration with Melinda Judge, Chitra Saraswati, Claire Perry, Jane Heyworth, and Peter Le Souëf of the University of Western Australia‘s School of Medicine and the Telethon Kids Institute, we found that higher baby death rates and larger household sizes (as an indicator of population density) lead to higher fertility rates.

In the first study of its kind, we provide a compelling argument that the United NationsSustainable Development Goals for reducing infant mortality can be accelerated by increasing access to family planning.

Although it sounds counterintuitive, higher baby death rates are linked to higher population growth because the more babies a women loses, the more children she is likely to have. Family planning, including access to quality contraception, enables women to plan pregnancies better and therefore reduce infant mortality to curb the so-called ‘replacement’, or ‘insurance’ effect.

We evaluated six conditions thought to influence a woman’s fertility — availability of family planning, quality of family planning, education, religion, mortality, and socio-economic conditions, across 64 low- to middle-income countries.

Specifically, we tested whether

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Remapping the superhighways travelled by the first Australians reveals a 10,000-year journey through the continent

3 02 2023

Not exactly a conservation topic, I know, but it does provide insights into how the ancestors of Indigenous Australians adapted to and thrived in a new and sometimes harsh landscape. The more I study elements of human ecology in deep time, the more awed I become at the frankly amazing capacity of First Peoples.


Our new research (co-authored by Stefani Crabtree, Devin White, Sean Ulm, Michael Bird, Al Williams, and Fred Saltré) has revealed that the process of peopling the entire continent of Sahul — the combined mega continent that joined Australia with New Guinea when sea levels were much lower than today — took 10,000 years.  

We combined new models of demography and wayfinding based on geographic inference to show the scale of the challenges faced by the ancestors of Indigenous people making their mass migration across the supercontinent more than 60,000 years ago.

The ancestors of Aboriginal people likely first entered the continent 75,000–50,000 years ago from what is today the island of Timor, followed by later migrations through the western regions of New Guinea.

This pattern led to a rapid expansion both southward toward the Great Australian Bight, and northward from the Kimberley region to settle all parts of New Guinea and, later, the southwest and southeast of Australia.

We did this research under the auspices of the ARC Centre of Excellence for Australian Biodiversity and Heritage (CABAH) and including international experts in Australia and the United States to investigate the most likely pathways and the timeframe needed to reach population sizes able to withstand the rigours of their new environment.

By combining two existing models predicting the routes these First Peoples took – ‘superhighways’ – and the demographic structure of these first populations, we were able to estimate the time for continental saturation more precisely. The new research has just been published in the journal Quaternary Science Reviews.

Based on detailed reconstructions of the topography of the ancient continent and models of past climate, we developed a virtual continent and programmed populations to survive in and move successfully through their new territory.

Navigating by following landscape features like mountains and hills and knowing where to find water led to successful navigation strategies. The First Peoples of Australia soon passed along cultural knowledge to subsequent generations facilitating the peopling of the whole continent.

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What we know we don’t know about animal tolerances to high temperatures

30 01 2023

Each organism has a limit of tolerance to cold and hot temperatures. So, the closer it lives to those limits, the higher the chances of experiencing thermal stress and potentially dying. In our recent paper, we revise gaps in the knowledge of tolerance to high temperatures in cold-blooded animals (ectotherms), a diverse group mostly including amphibians and reptiles (> 16,000 species), fish (> 34,000 species), and invertebrates (> 1,200,000 species).

As a scientist, little is more self-realising than to write and publish a conceptual paper that frames the findings of your own previous applied-research papers. This is the case with an opinion piece we have just published in Basic and Applied Ecology1 — 10 years, 4 research papers2-5 [see related blog posts here, here, here and here], and 1 popular-science article6 after I joined the Department of Biogeography and Global Change (Spanish National Research Council) to study the thermal physiology of Iberian lizards under the supervision of Miguel Araújo and David Vieites.

Iberian lizards for which heat tolerance is known (varying from 40 to 45 °C)
 
[left, top to bottom] Iberian emerald lizard (Lacerta schreiberi, from Alameda del Valle/Madrid) and Geniez’s wall lizard (Podarcis virescens, Fuertescusa/Cuenca), and [right, top to bottom] Algerian sand racer (Psammodromus algirus, Navacerrada/Madrid), Andalusian wall lizard (Podarcis vaucheri, La Barrosa/Cádiz), Valverde’s lizard (Algyroides marchi, Riópar/Albacete), and Cyren’s rock lizard (Iberolacerta cyreni, Valdesquí/Madrid). Heat-tolerance data deposited here and used to evaluate instraspecific variation of heat tolerance3,4. Photos: Salvador Herrando-Pérez.

In our new paper, we examine how much we know and what areas of research require further development to advance our understanding of how and why the tolerance of ectotherm fauna to high environmental temperature (‘heat tolerance’ hereafter) varies within and across the Earth’s biomes. We focus on data gaps using the global database GlobTherm as a reference template (see Box 1 below).

Our three main tenets

1. Population versus species data: Most large-scale ecophysiological research is based on modelling one measurement of heat tolerance per species (typically representing one population and/or physiological assay) over hundreds to thousands of species covering broad geographical, phylogenetic, and climatic gradients.

But there is ample evidence that heat tolerance changes a lot among populations occupying different areas of the distribution of a species, and such variation must be taken into account to improve our predictions of how species might respond to environmental change and face extinction.

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Tenure-Track Professorship in Conservation and Development

26 01 2023

The Faculty for Mathematics and Natural Sciences of Humboldt-Universität zu Berlin (HU Berlin), Geography Department, has an open position for a tenure-track professorship in Conservation and Development.

Starting as soon as possible. This is a Junior Professorship (W1 level, 100%) with a tenure track to a permanent professorship (W2 level, 100%). To verify whether the individual performance meets the requirements for permanent employment, an evaluation process will be opened not later than four years of the Junior Professorship. Tenure track professors at the HU Berlin are expected to do research and teaching, as well as to be active in university administration, in the promotion of young scientists, and in acquiring leadership and management skills. The concrete requirements out of the framework catalogue will be specified in the course of the appointment process.

We seek candidates with an outstanding research record in biodiversity conservation and sustainable development, with experience in working in the Global South. Successful candidates are rooted in conservation science and must have a doctoral degree in conservation science, development geography, environmental science, political ecology or related fields. We expect a demonstrated ability to work interdisciplinary, across the social and natural sciences to understand conservation challenges and and develop solutions.

We seek individuals with the vision, leadership and enthusiasm to build an internationally recognised research program. We expect collaboration with other research groups at the department, at HU Berlin and beyond, and a commitment to promoting a positive, diverse, and inclusive institutional culture. Experience in translating conservation science into action and/or work at the science/policy interface are beneficial.

We offer a tenure-track position in an international, young and vibrant department with an excellent scientific and education track record. The successful candidate will join an interdisciplinary group of faculty focused on human-environment relations, global change, and sustainability.

The salary will be according to W1 level, and after successful tenure evaluation W2 level. Employment at HU Berlin offers all benefits of the German public service system, including health insurance, an attractive pension plan, and social benefits.

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Interrupted flows in the Murray River endanger frogs

17 01 2023

Flooding in the Murray-Darling Basin is creating ideal breeding conditions for many native species that have evolved to take advantage of temporary flood conditions. Led by PhD candidate Rupert Mathwin, our team developed virtual models of the Murray River to reveal a crucial link between natural flooding and the extinction risk of endangered southern bell frogs (Litoria raniformis; also known as growling grass frogs).

Southern bell frogs are one of Australia’s 100 Priority Threatened Species. This endangered frog breeds during spring and summer when water levels increase in their wetlands. However, the natural flooding patterns in Australia’s largest river system have been negatively impacted by expansive river regulation that some years, sees up to 60% of river water extracted for human use.

Our latest paper describes how we built computer simulations of Murray-Darling Basin wetlands filled with simulated southern bell frogs. By changing the simulation from natural to regulated conditions, we showed that modern conditions dramatically increase the extinction risk of these beloved frogs.

The data clearly indicate that successive dry years raise the probability of local extinction, and these effects are strongest in smaller wetlands. Larger wetlands and those with more frequent inundation are less prone to these effects, although they are not immune to them entirely. The models present a warning — we have greatly modified the way the river behaves, and the modern river cannot support the long-term survival of southern bell frogs.’

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Influential conservation papers of 2022

3 01 2023

Following my annual tradition, I present the retrospective list of the ‘top’ 20 influential papers of 2022 as assessed by experts in Faculty Opinions (formerly known as F1000). These are in no particular order. See previous years’ lists here: 2021, 2020, 201920182017201620152014, and 2013.


Genetic variance in fitness indicates rapid contemporary adaptive evolution in wild animals — “… this paper adds a much-needed perspective to the status of genetic diversity and adaptive potential in contemporary populations.

Habitat, geophysical, and eco-social connectivity: benefits of resilient socio-ecological landscapes — “… distinguishes four distinct but interrelated types of connectivity: landscape, habitat, geophysical, and eco-social connectivity, of which the fourth type is new. The authors discuss how these different types of connectivity are related to ecosystem services and disservices, and how they interact with each other to influence landscape sustainability issues.

Glyphosate impairs collective thermoregulation in bumblebees — “… low-dose glyphosate, combined with global increases in temperature, converge to disrupt homeostatic regulation in bee colonies. This is a crucial revelation for understanding the loss of bees across the globe, as they serve as major pollinators in nature and agriculture.

Human disturbances affect the topology of food webs — “… provides great opportunities for the study of food web structures, their dynamics and stability under different human influences.

A comprehensive database of amphibian heat tolerance — “provides estimates of amphibian upper thermal limits – a relevant trait for assessing the vulnerability of this highly-threatened group of ectotherms to rising temperatures – derived from thousands of experimental studies.”

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Children born today will see literally thousands of animals disappear in their lifetime, as global food webs collapse

17 12 2022
Frida Lannerstrom/Unsplash, CC BY

Corey J. A. Bradshaw, Flinders University and Giovanni Strona, University of Helsinki

Climate change is one of the main drivers of species loss globally. We know more plants and animals will die as heatwaves, bushfires, droughts and other natural disasters worsen.

But to date, science has vastly underestimated the true toll climate change and habitat destruction will have on biodiversity. That’s because it has largely neglected to consider the extent of “co-extinctions”: when species go extinct because other species on which they depend die out.

Our new research shows 10% of land animals could disappear from particular geographic areas by 2050, and almost 30% by 2100. This is more than double previous predictions. It means children born today who live to their 70s will witness literally thousands of animals disappear in their lifetime, from lizards and frogs to iconic mammals such as elephants and koalas.

But if we manage to dramatically reduce carbon emissions globally, we could save thousands of species from local extinction this century alone.

Ravages of drought will only worsen in coming decades.
CJA Bradshaw

An extinction crisis unfolding

Every species depends on others in some way. So when a species dies out, the repercussions can ripple through an ecosystem.

For example, consider what happens when a species goes extinct due to a disturbance such as habitat loss. This is known as a “primary” extinction. It can then mean a predator loses its prey, a parasite loses its host or a flowering plant loses its pollinators.

A real-life example of a co-extinction that could occur soon is the potential loss of the critically endangered mountain pygmy possum (Burramys parvus) in Australia. Drought, habitat loss, and other pressures have caused the rapid decline of its primary prey, the bogong moth (Agrotis infusa).

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Promoting diversity in the lab

15 09 2022

My definition of a ‘lab’ is simply a group of people who do the science in question — and people are a varied bunch, indeed. But I wager that most scientists would not necessarily give much dedicated thought to the diversity of the people in their lab, and instead probably focus more on obtaining the most qualified and cleverest people for the jobs that need doing.

For example, I have yet to meet an overtly racist, sexist, or homophobic scientist involved actively in research today (although unfortunately, I am sure some do still exist), so I doubt that lab heads consciously avoid certain types of people when hiring or taking on new students as they once did. The problem here is not that scientists tend to exclude certain types of people deliberately based on negative stereotypes; rather, it concerns more the subconscious biases that might lurk within, and about which unfortunately most of us are blissfully unaware. But all scientists must be aware of, and seek to address, their hidden biases.

It is time to place my cards on the table: I am a middle-aged, Caucasian, male scientist who has lived in socially inclusive and economically fortunate countries his entire life. As such, I am the quintessential golden child of scientific opportunity, and I am therefore also one of the biggest impediments to human diversity in science. I am not able to change my status per se; however, I can change how I perceive, acknowledge, and act to address my biases.

The earlier scientists recognise these challenges in their career, the more effective they will be.

Gender balance

I acknowledge that as a man, I am already on thin ice discussing gender inequality in science today, for it is a massive topic that many, far more qualified people are tackling. But being of the male flavour means that I have to, like an alcoholic, admit that I have a problem, and then take steps to resolve that problem. After all, privilege is generally invisible to those who have it. If you are a male scientist reading this now, then my discussion is most pertinent to you. If you are female, then perhaps you can use some of these pointers to educate your male colleagues and students.

There is now ample evidence that science as a discipline is just as biased against women as most other sectors of professional employment, even though things have improved since the bad old days of scientific old-boys’ clubs. Journals tend to appoint more men than women on their editorial boards, and that editors display what is known as homophily when selecting reviewers for manuscripts: the tendency to select reviewers of the same gender as themselves.

Likewise, experimental evidence demonstrates that scientists in general rate male-authored science writing higher than female-authored works, and that academic scientists tend to favour male applicants over females for student positions. In the United Kingdom, as I suspect is more or less the case almost everywhere else, female academics in science, engineering, and mathematics also tend to have more administrative duties, and hence, less time to do research; they also have fewer opportunities for career development and training, as well as earning a lower salary, holding fewer senior roles, and being less likely to be granted permanent positions.

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Cartoon guide to biodiversity loss LXXIV

5 09 2022

Welcome to the fourth set of 7 cartoons for 2022. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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What does ‘collapse’ mean, and should we continue using the term?

30 08 2022

The conservation, environment, and sustainability literature is rife with the term ‘collapse’, applied to concepts as diverse as species extinction to the complete breakdown of civilisation. I have also struggled with its various meanings and implications, so I’m going to attempt to provide some clarity on collapse for my own and hopefully some others’ benefit.

State transitions (Fig. 2 from Keith et al. (2015))

From a strictly ecological perspective, ‘collapse’ could be described in the following (paraphrased) ways:

But there is still nor formal definition of ‘collapse’ in ecology, as identified by several researchers (Keith et al. 2013; Boitani et al. 2015; Keith et al. 2015; Sato and Lindenmayer 2017; Bland et al. 2018). While this oversight has been discussed extensively with respect to quantifying changes, I can find nothing in the literature that attempts a generalisable definition of what collapse should mean. Perhaps this is because it is not possible to identify a definition that is sufficiently generalisable, something that Boitani et al. (2015) described with this statement:

“The definition of collapse is so vague that in practice it will be possible (and often necessary) to define collapse separately for each ecosystem, using a variety of attributes and threshold values

Boitani et al. 2015

Despite all the work that has occurred since then, I fear we haven’t moved much beyond that conclusion.

Hell, cutting down the trees in the bush block next to my property constitutes a wholesale ‘collapse’ of the microcommunity of species using that patch of bush. An asteroid hitting the Earth and causing a mass extinction is also collapse. And everything in-between.

But at least ecologists have made some attempts to define and quantify collapse, even if an acceptable definition has not been forthcoming. The sustainability and broader environment literature has not even done that.

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Should we bring back the thylacine? We asked 5 experts

17 08 2022
Tasmanian Museum and Art Gallery

Signe Dean, The Conversation

In a newly announced partnership with Texas biotech company Colossal Biosciences, Australian researchers are hoping their dream to bring back the extinct thylacine is a “giant leap” closer to fruition.

Scientists at University of Melbourne’s TIGRR Lab (Thylacine Integrated Genetic Restoration Research) believe the new partnership, which brings Colossal’s expertise in CRISPR gene editing on board, could result in the first baby thylacine within a decade.

The genetic engineering firm made headlines in 2021 with the announcement of an ambitious plan to bring back something akin to the woolly mammoth, by producing elephant-mammoth hybrids or “mammophants”.

But de-extinction, as this type of research is known, is a highly controversial field. It’s often criticised for attempts at “playing God” or drawing attention away from the conservation of living species. So, should we bring back the thylacine? We asked five experts.

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Terror management

2 08 2022

As is my tendency, I like to wade carefully into other disciplines from time to time to examine what components they can bring to the conservation table. I do not profess any sort of expertise when I do so, but if I require a true expert for research purposes, then I will collaborate with said experts.

I often say to my students that in many ways, the science of sustainability and conservation is more or less resolved — what we need now is ways to manage the human side of the problems we face. The disciplines that deal with human management, such as psychology, economics, political science, and sociology, are mainly pursuits of the humanities (have I just argued myself out of a job?).

On the topic of human psychology, I think most people involved in some way with biodiversity conservation often contemplate why human societies are so self-destructive. Even in the face of logic and evidence, people deny what’s going on in front of their eyes (think anti-vaxxers, climate-change denialists, etc.), so it should be no wonder why many (most?) people deny their own existential threats. Yet, it still doesn’t seem to make much sense to us until we put the phenomenon into a psychological framework.

My apologies here to actual psychologists if I oversimplify or otherwise make mistakes, but the following explanation has done a lot for me personally in my own journey to understand this conundrum. It is also a good way to teach others about why there is so much reticence to fixing our environmental problems.

The idea is a rather simple one, but it requires a little journey to appreciate. Let’s pop back to the 1970s with the publication of Ernest Becker’s The Denial of Death, for which he won the Pulitzer Prize in 1974 (ironically, two months after his own death). In this book, Becker examined the awareness of death on human behaviour and the strategies that we have developed to mitigate our fear of it. This particular quote sums it up nicely:

This is the terror: to have emerged from nothing, to have a name, consciousness of self, deep inner feelings, and excruciating inner yearning for life and self expression — and with all this yet to die

Ernest Becker in The Denial of Death (1973)

The upshot is that we have evolved a whole raft of coping mechanisms to this personal existential dread. Some engage in overly hedonic pursuits to numb the anxiety; others try to “tranquillise themselves with the trivial”, essentially ignoring the terror, while others still manage the dread through religion and the hope of an existence beyond the mortal.

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Never underestimate the importance of a good figure

27 07 2022

I seem to end up frequently explaining to students and colleagues that it’s a good idea to spend a good deal of time to make your scientific figures the most informative and attractive possible.

But it’s a fine balance between overly flashy and downright boring. Needless to say, empirical accuracy is paramount.

But why should you care, as long as the necessary information is transferred to the reader? The most important answer to that question is that you are trying to catch the attention of editors, reviewers, and readers alike in a highly competitive sea of information. Sure, if the work is good and the paper well-written, you’ll still garner a readership; however, if you give your readers a bit of visual pleasure in the process, they’re much more likely to (a) remember and (b) cite your paper.

I try to ask myself the following when creating a figure — without unnecessary bells and whistles, would I present this figure in a presentation to a group of colleagues? Would I present it to an audience of non-experts? Would I want this figure to appear in a news article about my work? Of course, all of these venues require differing degrees of accuracy, complexity, and aesthetics, but a good figure should ideally serve to educate across very different audiences simultaneously.

A sub-question worth asking here is whether you think a colleague would use your figure in one of their presentations. Think of the last time you made a presentation and found that perfect figure that brilliantly portrays the point you are trying to get across. That’s the kind of figure you should strive to make in your own research papers.

I therefore tend to spend quite a bit of time crafting my figures, and after years of making mistakes and getting a few things right, and retrospectively discovering which figures appear to garner more attention than others, I can offer some basic advice about the DOs and DON’Ts of figure making. Throughout the following section I provide some examples from my own papers that I think demonstrate some of the concepts.

tables vs. graphs — The very first question you should ask yourself is whether you can turn that boring and ugly table into a graph of some sort. Do you really need that table? Can you not just translate the cell entries into a bar/column/xy plot? If you can, you should. When a table cannot easily be translated into a figure, most of the time it probably belongs in the Supplementary Information anyway.

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Cartoon guide to biodiversity loss LXXIII

15 07 2022

Welcome to the fourth set of 6 cartoons for 2022. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Journal ranks 2021

4 07 2022

Now that Clarivate, Google, and Scopus have recently published their respective journal citation scores for 2021, I can now present — for the 14th year running on ConvervationBytes.com — the 2021 conservation/ecology/sustainability journal ranks based on my journal-ranking method.

Like last year, I’ve added a few journals. I’ve also included in the ranking the Journal Citation Indicator (JCI) in addition to the Journal Impact Factor and Immediacy Index from Clarivate ISI, and the CiteScore (CS) in addition to the Source-Normalised Impact Per Paper (SNIP) and SCImago Journal Rank (SJR) from Scopus. 

You can access the raw data for 2021 and use my RShiny app to derive your own samples of journal ranks.

I therefore present the new 2021 ranks for: (i) 106 ecology, conservation and multidisciplinary journals, (ii) 27 open-access (i.e., you have to pay) journals from the previous category, (iii) 64 ‘ecology’ journals, (iv) 32 ‘conservation’ journals, (v) 43 ‘sustainability’ journals (with general and energy-focussed journals included), and (vi) 21 ‘marine & freshwater’ journals.

Remember not to take much notice if a journal boasts about how its Impact Factor has increased this year, because these tend to increase over time anyway What’s important is a journal’s relative (to other journals) rank.

Here are the results:

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