New job posting: Research Fellow in Eco-Epidemiology & Human Ecology

11 05 2023

We are currently seeking a Research Fellow in Eco-epidemiology/Human Ecology to join our team at Flinders University.

The successful candidate will develop spatial eco-epidemiological models for the populations of Indigenous Australians exposed to novel diseases upon contact with the first European settlers in the 18th Century. The candidate will focus on:

  • developing code to model how various diseases spread through and modified the demography of the Indigenous population after first contact with Europeans;
  • contributing to the research project by working collaboratively with the research team to deliver key project milestones;
  • independently contributing to ethical, high-quality, and innovative research and evaluation through activities such as scholarship, publishing in recognised, high-quality journals and assisting the preparation and submission of bids for external research funding; and
  • supervising of Honours and postgraduate research projects.


The ideal candidate will have advanced capacity to develop eco-epidemiological models that expand on the extensive human demographic models already developed under the auspices of the Australian Research Council Centre of Excellence for Australian Biodiversity and Heritage, of which Flinders is the Modelling Node. To be successful in this role, the candidate will demonstrate experience in coding advanced spatial models including demography, epidemiology, and ecology. The successful candidate will also demonstrate:

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Categories : Australia, behaviour, connectivity, demography, disease, ecology, environmental science, health, modelling, palaeo-ecology, population dynamics, research, science, societies

The sixth mass extinction is happening now, and it doesn’t look good for us

2 03 2022

Mounting evidence is pointing to the world having entered a sixth mass extinction. If the current rate of extinction continues we could lose most species by 2200. The implication for human health and wellbeing is dire, but not inevitable.

In the timeline of fossil evidence going right back to the first inkling of any life on Earth — over 3.5 billion years ago — almost 99 percent of all species that have ever existed are now extinct. That means that as species evolve over time — a process known as ‘speciation’ — they replace other species that go extinct.

Extinctions and speciations do not happen at uniform rates through time; instead, they tend to occur in large pulses interspersed by long periods of relative stability. These extinction pulses are what scientists refer to as mass extinction events.

The Cambrian explosion was a burst of speciation some 540 million years ago. Since then, at least five mass extinction events have been identified in the fossil record (and probably scores of smaller ones). Arguably the most infamous of these was when a giant asteroid smashed into Earth about 66 million years ago in what is now the Gulf of Mexico. The collision vapourised species immediately within the blast zone. Later, species were killed off by climate change arising from pulverised particulates suspended in the atmosphere, as well as intense volcano activity stimulated by the buckling of the Earth’s crust from the asteroid’s impact. Together, about 76 percent of all species around at the time went extinct, of which the disappearance of the dinosaurs is most well-known. But dinosaurs didn’t disappear altogether — the survivors just evolved into birds.

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Categories : anthropocene, biodiversity, carbon, climate change, conservation, decline, deforestation, disease, ecological literacy, economics, ecosystem, ecosystem services, education, environmental policy, evolution, exploitation, extinction, flood, food, habitat loss, harvest, health, human overpopulation, ocean, poverty, speciation, sustainability, threatened species, trophic cascades, water

Climate change will also make us more stupid

31 08 2021

Most people are at least vaguely aware that climate change isn’t good for us.

Let’s consider the obvious direct health effects, like heat exhaustion and stroke, dehydration, increased inhalation of particulate matter from bushfires and other pollutant sources, greater expression of allergies, higher incidence of cardiovascular and respiratory diseases, greater injury rates, and higher probability of disease transmission from flooding events (see review here).

Let’s not forget the rising incidence of mental illness either.

Then there are the climatic events that increase the probability of dying violently like in a bushfire or a flood, getting caned in a major storm by debris, personal injury from storm surges exacerbated by rising sea levels, or dying slowly due to undernutrition from crop failures.

Some of the more indirect, yet just-as-insidious repercussions are those climate-driven events that worsen all of the above, such as increasing poverty, rising violent interactions (both individual-level and full-on warfare), loss of healthcare capability (less infrastructure, fewer doctors), and increased likelihood of becoming a refugee.

Watts et al. 2015 The Lancet 386:1861-1914

So, when someone says increased warming at the pace we’re witnessing now isn’t a problem, tell them they’re full of shit.

But wait! There’s more!

Yes, climate change will also make us more stupid. Perhaps one of the lesser-appreciated byproducts of an increasingly warmer world driven by rising greenhouse-gas concentrations is the direct effects of carbon dioxide on a variety of physiological functions.

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Categories : agriculture, anthropocene, carbon, climate change, coasts, disease, education, Endarkenment, extremism, famine, flood, food, health, human overpopulation, poverty, societies

Worried about Earth’s future? Well, the outlook is worse than even scientists can grasp

14 01 2021

Daniel Mariuz/AAP

Corey J. A. Bradshaw, Flinders University; Daniel T. Blumstein, University of California, Los Angeles, and Paul Ehrlich, Stanford University

Anyone with even a passing interest in the global environment knows all is not well. But just how bad is the situation? Our new paper shows the outlook for life on Earth is more dire than is generally understood.

The research published today reviews more than 150 studies to produce a stark summary of the state of the natural world. We outline the likely future trends in biodiversity decline, mass extinction, climate disruption and planetary toxification. We clarify the gravity of the human predicament and provide a timely snapshot of the crises that must be addressed now.

The problems, all tied to human consumption and population growth, will almost certainly worsen over coming decades. The damage will be felt for centuries and threatens the survival of all species, including our own.

Our paper was authored by 17 leading scientists, including those from Flinders University, Stanford University and the University of California, Los Angeles. Our message might not be popular, and indeed is frightening. But scientists must be candid and accurate if humanity is to understand the enormity of the challenges we face.

Girl in breathing mask attached ot plant in container

Humanity must come to terms with the future we and future generations face. Shutterstock

Getting to grips with the problem

First, we reviewed the extent to which experts grasp the scale of the threats to the biosphere and its lifeforms, including humanity. Alarmingly, the research shows future environmental conditions will be far more dangerous than experts currently believe. Read the rest of this entry »


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Categories : Africa, agriculture, alien species, anthropocene, biodiversity, biowealth, carbon, climate change, climate shift, conservation, conservation biology, corruption, decline, deforestation, development, disease, drought, economics, ecosystem services, education, Endarkenment, environmental economics, environmental policy, environmental science, extinction, extinction debt, extremism, fire, Flinders University, governance, habitat loss, harvest, health, human overpopulation, investment, livestock, logging, management, ocean, planning, propaganda, restoration, science, seagrass, sustainability, synergies, threatened species, toxification, vegetation

Never let a good crisis go to waste

11 05 2020

pandemic

First published in the Millennium Alliance for Humanity and the Biosphere Blog on 5 May 2020.

by Professor Dan Blumstein (University of California at Los Angeles), Professor Paul Ehrlich (Stanford University), and Corey Bradshaw (Flinders University)

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Winston Churchill’s words have never been more important than today as we experience the society- and life-changing consequences of the COVID-19 pandemic.

The extent and severity of the disease is a result of ignoring decades of warnings by scientists about the general deterioration of humanity’s epidemiological environment, and specific warnings about confining live, wild animals in markets. The situation was made even more lethal by ignoring the warnings from epidemiologists and disease ecologists once it became clear that an imminent pandemic most likely arose from this practice. Many countries, including the United States, are still ignoring those warnings and the required actions to lessen the impact.

Accordingly, we should ask ourselves, “what else are we missing?” What other huge problems are hiding in plain sight where science could guide policy to avoid catastrophic future failures? For instance, there are two principal health threats that must be addressed immediately, and we must strike while the iron is hot.

The overuse of antibiotics in agriculture will cause widespread deaths from formerly treatable bacterial diseases because of the evolution of antibiotic resistance in microbes. The evolution of resistance is well-known, predictable, and obvious — not in retrospect, but now. By feeding antibiotics to otherwise healthy livestock, animals can be housed in higher densities and they grow faster. Read the rest of this entry »


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Categories : agriculture, Australia, biodiversity, climate change, conservation, disease, environmental policy, exploitation, habitat loss, health, human overpopulation, livestock, logging

Projecting global deaths from covid19

18 03 2020

covid

I know that it’s not the best way to project expected deaths from a pandemic disease, but being something of a demographer, I just couldn’t help myself.

I therefore took the liberty of punching in some basic probabilities into our world population model to see how many people could potentially die from covid19. But this is not an epidemiological model, so I’m probably vastly over-estimating the total death rates.

Nonetheless, the results were revealing.

I first took the expected mortality by age class based on the Chinese data so far. I then assumed a worst-case scenario of a 60% infection rate (i.e., 3 out of 5 of us will eventually catch the virus). I assumed these values across the entire globe (not taking into account greater or lesser susceptibility or probability of death among countries or regions).

I also considered two more scenarios: (i) double the mortality rate (in each age class), and (ii) the disease outbreak lasting two years instead of just one.

The graph below shows the four different outcomes based on these scenarios relative to the baseline (no covid): Read the rest of this entry »


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Categories : conservation, disease, human overpopulation, population dynamics

Influential conservation ecology papers of 2018

17 12 2018

e35f9ddeada029a053a15cd023abadf5
For the last five years I’ve published a retrospective list of the ‘top’ 20 influential papers of the year as assessed by experts in F1000 Prime — so, I’m doing so again for 2018 (interesting side note: six of the twenty papers highlighted here for 2018 appear in Science magazine). See previous years’ posts here: 2017, 2016, 2015, 2014, and 2013.

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Categories : anthropocene, aquaculture, Australia, biodiversity, biowealth, carbon, climate change, climate shift, community ecology, connectivity, conservation, conservation biology, conservation ecology, coral reefs, decline, deforestation, demography, ecology, economics, ecosystem, ecosystem function, ecosystem services, environmental policy, environmental science, exploitation, extinction, extinction debt, fish, fisheries, food, fragmentation, function, habitat loss, harvest, human overpopulation, invasive species, management, marine, marine protected area, modelling, pollination, pollution

Fertilisers can make plants sicker

25 01 2017

sick-plantLast year we reported experimental evidence that the dilution effect was the phenomenon by which greater biodiversity imparts disease resistance in plant communities. Our latest paper shows the mechanism underlying this.

In my ongoing collaboration with the crack team of plant community ecologists led by Shurong Zhou at Fudan University in Shanghai, we have now shown that nitrogen-based fertilisers — in addition to causing soil damage and environmental problems from run-off — reduce a plant community’s resistance to fungal diseases.

This means that prolonged use of artificial fertilisers can lead to the extinction of the most resistant plant species in a community, meaning that the remaining species are in fact more susceptible to diseases.

Continuing the experimental field trials in alpine meadows of the Tibetan Plateau, we tested the biodiversity resilience of an isolated  plant community to increasing concentrations of nitrogenous fertilisers. In this diverse and pristine ecosystem, we have finally established that extended fertilisation of soils not only alters the structure of natural plant communities, it also exacerbates pathogen emergence and transmission. Read the rest of this entry »


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Categories : Asia, biowealth, China, conservation, ecology, ecosystem, ecosystem function, ecosystem services, extinction, function

Influential conservation papers of 2015

25 12 2015

most popularAs I did last year and the year before, here’s another arbitrary, retrospective list of the top 20 influential conservation papers of 2015 as assessed via F1000 Prime.

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Categories : conservation

Influential conservation papers of 2014

22 12 2014

splash2Another year, another arbitrary retrospective list – but I’m still going to do it. Based on the popularity of last year’s retrospective list of influential conservation papers as assessed through F1000 Prime, here are 20 conservation papers published in 2014 that impressed the Faculty members.

Once again for copyright reasons, I can’t give the whole text but I’ve given the links to the F1000 assessments (if you’re a subscriber) and of course, to the papers themselves. I did not order these based on any particular criterion.

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Categories : conservation

Human population size: speeding cars can’t stop quickly

28 10 2014

Stop breeding cartoon-Steve Bell 1994Here at ConservationBytes.com, I write about pretty much anything that has anything remotely to do with biodiversity’s prospects. Whether it is something to do with ancient processes, community dynamics or the wider effects of human endeavour, anything is fair game. It’s a little strange then that despite cutting my teeth in population biology, I have never before tackled human demography. Well as of today, I have.

The press embargo has just lifted on our (Barry Brook and my) new paper in PNAS where we examine various future scenarios of the human population trajectory over the coming century. Why is this important? Simple – I’ve argued before that we could essentially stop all conservation research tomorrow and still know enough to deal with most biodiversity problems. If we could only get a handle on the socio-economic components of the threats, then we might be able to make some real progress. In other words, we need to find out how to manage humans much more than we need to know about the particulars of subtle and complex ecological processes to do the most benefit for biodiversity. Ecologists tend to navel-gaze in this arena far too much.

So I called my own bluff and turned my attention to humans. Our question was simple – how quickly could the human population be reduced to a more ‘sustainable’ size (i.e., something substantially smaller than now)? The main reason we posed that simple, yet deceptively loaded question was that both of us have at various times been faced with the question by someone in the audience that we were “ignoring the elephant in the room” of human over-population.

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Categories : anthropocene, Asia, conservation, demography, economics, ecosystem services, endemism, environmental policy, famine, health, human overpopulation, modelling, population dynamics, science, threatened species

Lose biodiversity and you’ll get sick

14 03 2014

dengueHere’s a (paraphrased) recommendation I did recently for F1000 about a cool avenue of research I’ve been following for a few years now. Very interesting, but much, much more to do.

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The core concepts of conservation ecology are well-established: we know that habitat loss, fragmentation, invasive species, over-exploitation and of course, climate change, are bad for biodiversity. This well-quantified scientific baseline has led the discipline recently to embark on questions pertaining more to the (a) implications of biodiversity loss for humanity and (b) what we can do to offset these. A recent paper by Morand and colleagues addresses perhaps one of the most compelling reasons that human society should appreciate biodiversity beyond its intrinsic value; as biodiversity degrades, so too does human health.

Some argue that the only way to convince society in general that biodiversity is worth protecting is that we link its loss directly to degrading human health, wealth and well-being. Confirmation of such relationships at a variety of spatial and temporal scales is therefore essential. Morand and colleagues used data from a variety of sources to test two predictions: (1) that the number of infectious disease should increase as overall biodiversity increases and (2) that biodiversity loss, inferred from species threat and deforestation data, should increase the number of infectious disease outbreaks in humans. Using data from 28 countries in the Asia-Pacific region, they confirmed both predictions. Read the rest of this entry »


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Categories : agriculture, biodiversity, climate change, conservation, decline, deforestation, disease, ecosystem function, ecosystem services, fragmentation, habitat loss, malaria

Want to work with us?

22 03 2013

© Beboy-Fotolia

© Beboy-Fotolia

Today we announced a HEAP of positions in our Global Ecology Lab for hot-shot, up-and-coming ecologists. If you think you’ve got what it takes, I encourage you to apply. The positions are all financed by the Australian Research Council from grants that Barry Brook, Phill Cassey, Damien Fordham and I have all been awarded in the last few years. We decided to do a bulk advertisement so that we maximise the opportunity for good science talent out there.

We’re looking for bright, mathematically adept people in palaeo-ecology, wildlife population modelling, disease modelling, climate change modelling and species distribution modelling.

The positions are self explanatory, but if you want more information, just follow the links and contacts given below. For my own selfish interests, I provide a little more detail for two of the positions for which I’m directly responsible – but please have a look at the lot.

Good luck!

CJA Bradshaw

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Job Reference Number: 17986 & 17987

The world-leading Global Ecology Group within the School of Earth and Environmental Sciences currently has multiple academic opportunities. For these two positions, we are seeking a Postdoctoral Research Associate and a Research Associate to work in palaeo-ecological modelling. Read the rest of this entry »


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Categories : alien species, Australia, biodiversity, climate change, conservation, conservation biology, demography, disease, environmental science, extinction, harvest, invasive species, population dynamics, population viability analysis, PVA, science, scientific writing, stochasticity, synergies, The University of Adelaide, threatened species

Where the sick buffalo roam

28 10 2011

It’s been some time coming, but today I’m proud to announce a new paper of ours that has just come out in Journal of Applied Ecology. While not strictly a conservation paper, it does provide some novel tools for modelling populations of threatened species in ways not available before.

The Genesis

A few years ago, a few of us (Bob Lacy, Phil Miller and JP Pollak of Vortex fame, Barry Brook, and a few others) got together in a little room at the Brookfield Zoo in the suburban sprawl of Chicago to have a crack at some new modelling approaches the Vortex crew had recently designed. The original results were pleasing, so we had a follow-up meeting last year (thanks to a few generous Zoo benefactors) and added a few post-docs and students to the mix (Damien Fordham, Clive McMahon, Tom Prowse, Mike Watts, Michelle Verant). The great population modeller Resit Akçakaya also came along to assist and talk about linkages with RAMAS.

Out of that particular meeting a series of projects was spawned, and one of those has now been published online: Novel coupling of individual-based epidemiological and demographic models predicts realistic dynamics of tuberculosis in alien buffalo.

The Coupling

So what’s so novel about modelling disease in buffalo, and why would one care? Well, here’s the interesting part. The buffalo-tuberculosis example was a great way to examine just how well a new suite of models – and their command-centre module – predicted disease dynamics in a wild population. The individual-based population modelling software Vortex has been around for some time, and is now particularly powerful for predicting the extinction risk of small populations; the newest addition to the Vortex family, called Outbreak, is also an individual-based epidemiological model that allows a population of individuals exposed to a pathogen to progress over time (e.g., from susceptible, exposed, infectious, recovered/dead). Read the rest of this entry »


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Categories : Australia, buffalo, conservation, ecology, harvest, invasive species, mammal, modelling, population dynamics, tropical


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