Genetic Management of Fragmented Animal and Plant Populations

10 12 2016

logoThat is the title of a new textbook that will be available mid-2017.

After almost 6 years work, authors Dick Frankham, Jonathan Ballou, Katherine Ralls, Mark Eldridge, Michele Dudash, Charles Fenster, Bob Lacy & Paul Sunnucks have produced an advanced textbook/research monograph that aims to provoke a paradigm shift in the management of small, isolated population fragments of animals and plants.

One of the greatest unmet challenges in conservation biology is the genetic management of fragmented populations of threatened animal and plant species. More than a million small, isolated, population fragments of threatened species are likely suffering inbreeding depression, loss of evolutionary potential, and elevated extinction risks (genetic erosion). Re-establishing gene flow between populations is required to reverse these effects, but managers very rarely do this. On the contrary, molecular genetic methods are mainly being used to document genetic differentiation among populations, with most studies concluding that genetically differentiated populations should be managed separately (i.e., kept isolated), thereby dooming many populations to eventual extinction.

The need for a paradigm shift in genetic management of fragmented populations has been highlighted as a major issue in conservation. The rapidly advancing field of molecular genetics is continually providing new tools to measure the extent of population fragmentation and its genetic consequences. However, adequate guidance on how to use these data for effective conservation is still lacking, and many populations are going extinct principally for genetic reasons. Consequently, there is now urgent need for an authoritative textbook on the subject.

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Species-area & species-accumulation curves not the same

30 05 2016

IBI’ve just read an elegant little study that has identified the main determinants of differences in the slope of species-area curves and species-accumulation curves.

That’s a bit of a mouthful for the uninitiated, so if you don’t know much about species-area theory, let me give you a bit of background for why this is an important new discovery.

Perhaps one of the only ‘laws’ in ecology comes from the observation that as you sample from larger and larger areas of any habitat type, the number of species tends to increase. This of course originates from MacArthur & Wilson’s classic book, The Theory of Island Biography (1967), and while simple in basic concept, it has since developed into a multi-headed Hydra of methods, analysis, theory and jargon.

One of the most controversial aspects of generic species-area relationships is the effect of different sampling regimes, a problem I’ve blogged about before. Whether you are sampling once-contiguous forest of habitat patches in a ‘matrix’ of degraded landscape, a wetland complex, a coral reef, or an archipelago of true oceanic islands, the ‘ideal’ models and the interpretation thereof will likely differ, and in sometimes rather important ways from a predictive and/or applied perspective. Read the rest of this entry »

It’s not all about cats

20 10 2014

Snake+OilIf you follow any of the environment news in Australia, you will most certainly have seen a lot about feral cats in the last few weeks. I’ve come across dozens of articles in the last week alone talking about the horrendous toll feral cats have had on Australian wildlife since European arrival. In principle, this is a good thing because finally Australians are groggily waking to the fact that our house moggies and their descendants have royally buggered our biodiversity. As a result, we have the highest mammal extinction rate of any country.

But I argue that the newfound enthusiasm for killing anything feline is being peddled mainly as a distraction from bigger environmental issues and to camouflage the complete incompetence of the current government and their all-out war on the environment.

Call me cynical, but when I read headlines like “Australia aims to end extinction of native wildlife by 2020” and Environment Minister Hunt’s recent speech that he has “… set a goal of ending the loss of mammal species by 2020“, I get more than just a little sick to the stomach.

What a preposterous load of shite. Moreover, what a blatant wool-pulling-over-the-eyes public stunt. Read the rest of this entry »

Biodiversity Hotspots have nearly burnt out

10 07 2014

dying embersI recently came across a really important paper that might have flown under the radar for many people. For this reason, I’m highlighting it here and will soon write up a F1000 Recommendation. This is news that needs to be heard, understood and appreciated by conservation scientists and environmental policy makers everywhere.

Sean Sloan and colleagues (including conservation guru, Bill Laurance) have just published a paper entitled Remaining natural vegetation in the global biodiversity hotspots in Biological Conservation, and it we are presented with some rather depressing and utterly sobering data.

Unless you’ve been living under a rock for the past 20 years, you’ll have at least heard of the global Biodiversity Hotspots (you can even download GIS layers for them here). From an initial 10, to 25, they increased penultimately to 34; most recently with the addition of the Forests of East Australia, we now have 35 Biodiversity Hotspots across the globe. The idea behind these is to focus conservation attention, investment and intervention in the areas with the most unique species assemblages that are simultaneously experiencing the most human-caused disturbances.

Indeed, today’s 35 Biodiversity Hotspots include 77 % of all mammal, bird, reptile and amphibian species (holy shit!). They also harbour about half of all plant species, and 42 % of endemic (not found anywhere else) terrestrial vertebrates. They also have the dubious honour of hosting 75 % of all endangered terrestrial vertebrates (holy, holy shit!). Interestingly, it’s not just amazing biological diversity that typifies the Hotspots – human cultural diversity is also high within them, with about half of the world’s indigenous languages found therein.

Of course, to qualify as a Biodiversity Hotspot, an area needs to be under threat – and under threat they area. There are now over 2 billion people living within Biodiversity Hotspots, so it comes as no surprise that about 85 % of their area is modified by humans in some way.

A key component of the original delimitation of the Hotspots was the amount of ‘natural intact vegetation’ (mainly undisturbed by humans) within an area. While revolutionary 30 years ago, these estimates were based to a large extent on expert opinions, undocumented assessments and poor satellite data. Other independent estimates have been applied to the Hotspots to estimate their natural intact vegetation, but these have rarely been made specifically for Hotspots, and they have tended to discount non-forest or open-forest vegetation formations (e.g., savannas & shrublands).

So with horribly out-of-date vegetation assessments fraught with error and uncertainty, Sloan and colleagues set out to estimate what’s really going on vegetation-wise in the world’s 35 Biodiversity Hotspots. What they found is frightening, to say the least.

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50/500 or 100/1000 debate not about time frame

26 06 2014

Not enough individualsAs you might recall, Dick Frankham, Barry Brook and I recently wrote a review in Biological Conservation challenging the status quo regarding the famous 50/500 ‘rule’ in conservation management (effective population size [Ne] = 50 to avoid inbreeding depression in the short-term, and Ne = 500 to retain the ability to evolve in perpetuity). Well, it inevitably led to some comments arising in the same journal, but we were only permitted by Biological Conservation to respond to one of them. In our opinion, the other comment was just as problematic, and only further muddied the waters, so it too required a response. In a first for me, we have therefore decided to publish our response on the arXiv pre-print server as well as here on

50/500 or 100/1000 debate is not about the time frame – Reply to Rosenfeld

cite as: Frankham, R, Bradshaw CJA, Brook BW. 2014. 50/500 or 100/1000 debate is not about the time frame – Reply to Rosenfeld. arXiv: 1406.6424 [q-bio.PE] 25 June 2014.

The Letter from Rosenfeld (2014) in response to Jamieson and Allendorf (2012) and Frankham et al. (2014) and related papers is misleading in places and requires clarification and correction, as follows: Read the rest of this entry »

If biodiversity is so important, why is Europe not languishing?

17 03 2014

collapseI don’t often respond to many comments on this blog unless they are really, really good questions (and if I think I have the answers). Even rarer is devoting an entire post to answering a question. The other day, I received a real cracker, and so I think it deserves a highlighted response.

Two days ago, a certain ‘P. Basu’ asked this in response to my last blog post (Lose biodiversity and you’ll get sick):

I am an Indian who lived in Germany for quite a long period. Now, if I am not grossly mistaken, once upon a time Germany and other west european countries had large tracts of “real” forests with bears, wolves, foxes and other animals (both carnivore and herbivore). Bear has completely disappeared from these countries with the advent of industrialization. A few wolves have been kept in more or less artificially created forests. Foxes, deer and hares, fortunately, do still exist. My question is, how come these countries are still so well off – not only from the point of view of economy but also from the angle of public health despite the loss of large tracts of natural forests? Or is it that modern science and a health conscious society can compensate the loss of biodiversity.

“Well”, I thought to myself, “Bloody good question”.

I have come across this genre of question before, but usually under more hostile circumstances when an overtly right-wing respondent (hell, let’s call a spade a spade – a ‘completely selfish arsehole’) has challenged me on the ‘value of nature’ logic (I’m not for a moment suggesting that P. Basu is this sort of person; on the contrary, he politely asked an extremely important question that requires an answer). The comeback generally goes something like this: “If biodiversity is so important, why aren’t super-developed countries wallowing in economic and social ruin because they’ve degraded their own life-support systems? Clearly you must be wrong, Sir.”

There have been discussions in the ecological and sustainability literature that have attempted to answer this, but I’ll give it a shot here for the benefit of readers. Read the rest of this entry »

Biowealth: all creatures great and small

4 12 2013

Curious Country flyer“So consider the crocodiles, sharks and snakes, the small and the squirmy, the smelly, slimy and scaly. Consider the fanged and the hairy, the ugly and the cute alike. The more we degrade this astonishing diversity of evolved life and all its interactions on our only home, the more we expose ourselves to the ravages of a universe that is inherently hostile to life.”

excerpt from ‘Biowealth: all creatures great and small’ The Curious Country (C.J.A. Bradshaw 2013).

I’ve spent the last few days on the east coast with my science partner-in-crime, Barry Brook, and one of our newest research associates (Marta Rodrigues-Rey Gomez). We first flew into Sydney at sparrow’s on Monday, then drove a hire car down to The ‘Gong to follow up on some Australian megafauna databasing & writing with Bert Roberts & Zenobia Jacobs. On Tuesday morning we then flitted over to Canberra where we had the opportunity to attend the official launch of a new book that Barry and I had co-authored.

The book, The Curious Country, is an interesting experiment in science communication and teaching dreamed up by Australia’s Chief Scientist, Professor Ian Chubb. Realising that the average Aussie has quite a few questions about ‘how stuff works’, but has little idea how to answer those questions, Ian engaged former Quantum star and science editor, Leigh Dayton, to put together a short, punchy, topical and easily understood book about why science is good for the country.

Yes, intuitive for most of you out there reading this, but science appreciation isn’t always as high as it should be amongst the so-called ‘general public’. Ian thought this might be one way to get more people engaged.

When honoured with the request to write an interesting chapter on biodiversity for the book, I naturally accepted. It turns out Barry was asked to do one on energy provision at the same time (but we didn’t know we had both been asked at the time). Our former lab head, Professor David Bowman, was also asked to write a chapter about fire risk, so it was like a mini-reunion yesterday for the three of us.

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