Australia: the world’s unsustainable ‘mine’

16 09 2020

The COVID-19 pandemic has finally woken a few people up in this country. The closure of our automotive industry, the volatility of the mining sector, the deteriorating relations with our largest trading partner (China) — all these have seem to have acted like smelling salts for our semi-conscious leaders.

Australia has an abysmal manufacturing capacity, and I know that trying to fix this is very much on the table now at the highest levels. Australia is for the most part a 7.7 million km2 ‘mine’ to the world — we of course dig up our minerals and ship them overseas, and we export shit-tonnes of coal.

But much of our agricultural produce goes overseas too, including the very poorly valued live-export industry that takes the little water and minerals already in Australian soils and turns them inefficiently into livestock that is then sold overseas whole and living. Even putting aside the woeful animal-welfare issues this entails, it’s not much of a value-add and really a poor business model.

Read the rest of this entry »




Error-free genetic repositories: case of amphibians

18 08 2020

In our new study, we curated > 39,000 amphibian mitochondrial DNA (mtDNA) sequences from GenBank, identified > 2,000 sequencing and taxonomic errors, and published the quality-checked records as a curated dataset with an automated workflow in R. High-quality genetic data should help quantify and protect the diversity of the most threatened vertebrate group on Earth.

frogs

Upper left: species of Boophis from Andasibe, Madagascar. Upper right: Dendropsophus anceps from State of Rio de Janeiro, Brazil. Lower left; Dendropsophus bipunctatus from State of Rio de Janeiro, Brazil. Lower right: Bufo bufo from Gelderland, The Netherlands. All images from the author.

Scientists from a broad range of biological disciplines use genetic information like DNA sequences to test ecological and evolutionary hypotheses. Critically, genetics are today essential for naming species and therefore quantifying biodiversity, as well as determining where species live and how many individuals of a species occur in the wild.

Researchers are routinely asked, and more recently frequently required, by scientific journals to submit their DNA sequences to GenBank (among other public repositories of genetic data) as a requirement for publishing a paper. Although GenBank provides some quality controls (e.g., to filter sequences with bacterial contaminants and those from other kingdoms), authors are responsible for the quality of their genetic data and have full freedom to assign these to species in the taxonomy database of GenBank. Notably, once sequences have been deposited in GenBank, records are rarely updated in light of identified errors often resulting from taxonomic progress.

Two important notions emerge from the former status quo: Read the rest of this entry »





The only constant is change

27 07 2020

I just wrote a piece for the Flinders University alumnus magazine — Encounter — and I thought I’d share it here.

encounter-2020_Page_01

As an ecologist concerned with how life changes and adapts to the vagaries of climate and pervasive biological shuffling, ‘constant change’ is more than just a mantra — it is, in fact, the mathematical foundation of our entire discipline.

But if change is inevitable, how can we ensure it is in the right direction?

Take climate change for example. Since the Earth first formed it has experienced abrupt climate shifts many times, both to the detriment of most species in existence at any given time, and to the advantage of those species evolving from the ashes.

For more than 3.5 billion years, species have evolved and gone extinct, such that more than 99% of all species that have ever existed are now confined, permanently, to the vaults of the past.

Read the rest of this entry »





A brief history of environmentalism in Australia since European invasion

29 06 2020

A (heavily) modified and updated excerpt from our 2015 book Killing the Koala and Poisoning the Prairie

The Australian awakening to its environmental dilemmas was a little more sluggish than elsewhere in the New World. Not only did Europeans arrive in Australia en masse only about 250 years ago, they had a more limited view of their new landscape, and were, at least initially, constrained by the harshness of their new home. Those mostly British settlers brought with them the fully formed ideas of development and progress shaped by centuries of land use in the Motherland. That ideal of conquering wilderness and transforming it into the bucolic landscape typical of the English countryside was their driving force.

The early settlers viewed the Australian bush as ugly and monotonous, features that could only be overcome by human occupation and cultivation. This neo-classical view, homesickness and the Romantic desire to transform their homes and farms into an image of those from their homeland, were defining forces in early Australian history. Unlike in Europe, though, where there were cultural taboos associated with forest degradation — bound in mysticism, spirituality, folklore and politics — no such restrictions applied to the unfamiliar Australian bush.

In fact, the Australian government passed the Crown Lands Alienation Act in 1861, which was designed to ‘open up’ the colony to settlement, and penalized landholders for not clearing the land (via a forfeit of the land back to the Crown). That single Act guaranteed the deforestation wave would continue for over a 100 years. That, and the persistent desire to make the new land look as much as possible as the old, has ensured that continuing demise of Australia’s biodiversity.

Figure 3.3-Clearing for Agriculture

Clearing for agriculture in early settlement. Anonymous, Government Farm at Castle Hill, circa 1803. Watercolour, 24×35 cm. Permission to reproduce courtesy of the Mitchell Library, State Library of New South Wales

Interestingly, clashes over land use between the settlers and Indigenous peoples were probably some of the first demonstrations of what today we would call ‘environmentalism’ in Australia. Aboriginal nations were intent on preserving their way of life (and indeed, their lives) in the face of the settlers’ onslaught. But this was seen, at most, as a mild inconvenience for the new Australians who in response invoked the idea of terra nullius — that no one owned the land, making it available to anyone (white) who wished to ‘improve’ (clear) it. Read the rest of this entry »





Cartoon guide to biodiversity loss LXI

31 05 2020

The fourth set of biodiversity cartoons for 2020. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


Read the rest of this entry »





Extinction Anxiety

21 05 2020

Earlier this week, the SBS show The Feed did a short segment called ‘Extinction Anxiety’ where I talked with host Alice Matthews about biodiversity extinctions. Given that it has so far only been available in Australia, I made a copy here for others to view.

For more information on the state of global biodiversity, see this previous post.

 

 

CJA Bradshaw





Never let a good crisis go to waste

11 05 2020

pandemic

First published in the Millennium Alliance for Humanity and the Biosphere Blog on 5 May 2020.

by Professor Dan Blumstein (University of California at Los Angeles), Professor Paul Ehrlich (Stanford University), and Corey Bradshaw (Flinders University)

Winston Churchill’s words have never been more important than today as we experience the society- and life-changing consequences of the COVID-19 pandemic.

The extent and severity of the disease is a result of ignoring decades of warnings by scientists about the general deterioration of humanity’s epidemiological environment, and specific warnings about confining live, wild animals in markets. The situation was made even more lethal by ignoring the warnings from epidemiologists and disease ecologists once it became clear that an imminent pandemic most likely arose from this practice. Many countries, including the United States, are still ignoring those warnings and the required actions to lessen the impact.

Accordingly, we should ask ourselves, “what else are we missing?” What other huge problems are hiding in plain sight where science could guide policy to avoid catastrophic future failures? For instance, there are two principal health threats that must be addressed immediately, and we must strike while the iron is hot.

The overuse of antibiotics in agriculture will cause widespread deaths from formerly treatable bacterial diseases because of the evolution of antibiotic resistance in microbes. The evolution of resistance is well-known, predictable, and obvious — not in retrospect, but now. By feeding antibiotics to otherwise healthy livestock, animals can be housed in higher densities and they grow faster. Read the rest of this entry »





Shifting from prevention to damage control

5 05 2020

timeBack in March this year before much of the world morphed into the weirdness that now dictates all facets of life, I wrote an update for the Is This How You Feel project led by Joe Duggan.

It was an exercise in emotional expression not necessarily grounded in empiricism. But in that particular piece, I had written the following line:

Few scientists in my field are still seriously considering avoidance of environmental collapse; instead, the dominant discourse is centred on damage control.

But is this correct? Is this how most scientists in conservation feel today? In a way, this post serves both as a rationale for my expectation, and as a question for the wider community.

My rationale for that contention is that it is undeniable that biodiversity is going down the toilet faster than even some of the most pessimistic of us could have predicted. We are without doubt within the sixth mass extinction event every experienced on the Earth for at least the last 600 million years.

Yet, there have never been more conservation biologists and practitioners. There have never been more international treaties and accords that expressly aim to protect biodiversity.

To assert that we have failed is unhelpful fatalism, yet it cannot be ignored that biodiversity’s predicament and those charged with turning around its fate are not exactly replete with successes. Read the rest of this entry »





South Australia is still killing dingoes

14 04 2020

As we did for Victoria, here’s our submission to South Australia’s proposed changes to its ‘wild dog’ and dingo policy (organised again by the relentless and venerable Dr Kylie Cairns):

JE201608161745

© Jason Edwards Photography

14 April 2020

The Honourable Tim Whetstone MP, Minister for Primary Industries and Regional Development, South Australia

RE: PROPOSED CHANGES TO THE SA WILD DOG AND DINGO POLICY

Dear Minister,

The undersigned welcome the opportunity to comment on the proposed changes to the South Australian (SA) Government’s ‘Wild dog and Dingo’ declared animal policy under section 10 (1)(b) of the Natural Resources Management Act 2004. The proposed changes raise serious concerns for dingoes in SA because it:

1. Requires all landholders to follow minimum baiting standards, including organic producers or those not experiencing stock predation.

  • Requires dingoes within Ngarkat Conservation Park (Region 4) to be destroyed, with ground baiting to occur every 3 months.
  • Requires ground baiting on land irrespective of whether stock predation is occurring or not, or evidence of dingo (wild dog) presence.

2. Allows aerial baiting of dingoes (aka wild dogs) in all NRM regions – including within National Parks.

3. Uses inappropriate and misleading language to label dingoes as “wild dogs”

We strongly urge the PIRSA to reject the proposed amendments to the SA wild dog and dingo policy. Instead the PIRSA should seek consultation with scientific experts in ecology, biodiversity and wildlife-conflict to develop a policy which considers the important ecological and cultural identity of the dingo whilst seeking to minimise their impact on livestock using best-practice and evidence-based guidelines. Key to this aim, livestock producers should be assisted with the help of PIRSA to seek alternative stock protection methodology and avoid lethal control wherever possible. On the balance of scientific evidence, protection of dingoes should be enhanced rather than diminished. Widespread aerial baiting programs are not compatible with the continued persistence of genetically intact and distinct dingoes in SA.

In this context, we strongly emphasise the following points: Read the rest of this entry »





Cartoon guide to biodiversity loss LX

8 04 2020

The third set of biodiversity cartoons for 2020 (plus a video treat). See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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A plant’s adaptive traits don’t follow climate conditions as you might expect

27 03 2020

mountain

Just a quick post today, my last one for March. Like probably most of you, I’ve been trying to pretend to be as normal as possible despite the COVID-19 surrealism all around me. But even COVID-19 has shifted my research to a small degree.

But I’m not going to talk about the global pandemic right now (I can almost hear the collective sigh of relief). Instead, I’m going to go back to topic and discuss a paper that I’ve just co-authored.

Last year I went to China’s Yunnan Province where I met some fantastic colleagues at the Xishuangbanna Tropical Botanical Garden who were doing some very cool stuff with the variation in plant functional traits across environmental gradients.

Well, those colleagues invited me to participate in one those research projects, and I’m happy to say that the result has just been published in Forests.

Measuring the functional traits of different alpine trees species in the Changbai Mountains of far north-eastern China (no, I didn’t get to go there), the research set out to test how these varied among species and elevation.

Of course, one expects that different trees use different combinations of traits to survive the rigours of mountain life (high variation in temperature, freezing, wind, etc.), but generally speaking, you might expect things like xylem vessel diameter and density to change more or less monotonically (i.e., changing in a consistent manner as elevation rises or falls). This is because trees should adapt their traits to the local conditions as best they can. Read the rest of this entry »





How I feel now about climate change

10 03 2020

bleak-2-david-vogler

‘Bleak No. 2’ by David Vogler

Five years ago I was asked by a researcher at the Australia National University, Joe Duggan, how I ‘felt’ about climate change.

This was part of an original initiative that put a human face on the scientists working on elements of one of society’s greatest existential threats.

Thus, Is This How You Feel? became a massive success in terms of bringing to the world the idea that scientists are also deeply affected by what they see happening around them.

Five years later, Joe asked me and all the other scientists who participated to provide an update on how we feel.

Here’s what I wrote: Read the rest of this entry »





In pursuit of an ecological resilience in the Anthropocene

3 03 2020

Changing TidesAn excerpt from Alejandro Frid‘s new book, Changing Tides: An Ecologist’s Journey to Make Peace with the Anthropocene (published first in Sierra, with photos courtesy of New Society Publishers)

The birth of my daughter, in 2004, thrust upon me a dual task: to be scientifically realistic about all the difficult changes that are here to stay, while staying humanly optimistic about the better things that we still have.

By the time my daughter turned eleven, I had jettisoned my nos­talgia for the Earth I was born into in the mid-196os—a planet that, of course, was an ecological shadow of Earth 100 years before, which in turn was an ecological shadow of an earlier Earth. The pragmatist in me had embraced the Anthropocene, in which humans dominate all biophysical processes, and I ended up feeling genuinely good about some of the possible futures in which my daughter’s generation might grow old.

It was a choice to engage in a tough situation. An acknowledgement of rapid and uninvited change. A reaffirmed commitment to everything I have learned, and continue to learn, as an ecologist working with Indigenous people on marine conservation. Fundamental to this perspective is the notion of resilience: the ability of someone or something—a culture, an ecosystem, an economy, a person—to absorb shocks yet still maintain their essence.

But what is essence? Read the rest of this entry »





The state of global biodiversity — it’s worse than you probably think

24 01 2020

Chefurka biomass slide

I often find myself in a position explaining to non-professionals just how bad the state of global biodiversity really is. It turns out too that even quite a few ecologists seem to lack an appreciation of the sheer magnitude of damage we’ve done to the planet.

The loss of biodiversity that has occurred over the course of our species’ time on Earth is staggering. This loss is now truly planetary in scale and caused by human actions, albeit the severity of which is unequally distributed across the globe1. While Sandra Díaz and company recently summarised the the extent of the biodiversity crisis unfolding1 well in their recent synopsis of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES)2 report, I’m going to repeat some of the salient summary statements here, and add a few others. Read the rest of this entry »





Influential conservation ecology papers of 2019

24 12 2019

Bradshaw-Waves breaking on rocks Macquarie Island
As I’ve done for the last six years, I am publishing a retrospective list of the ‘top’ 20 influential papers of 2109 as assessed by experts in F1000 Prime (in no particular order). See previous years’ lists here: 20182017, 20162015, 2014, and 2013.

 

 

 

 

 

 

Read the rest of this entry »





Did people or climate kill off the megafauna? Actually, it was both

10 12 2019

When freshwater dried up, so did many megafauna species.
Centre of Excellence for Australian Biodiversity and Heritage, Author provided

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Earth is now firmly in the grips of its sixth “mass extinction event”, and it’s mainly our fault. But the modern era is definitely not the first time humans have been implicated in the extinction of a wide range of species.

In fact, starting about 60,000 years ago, many of the world’s largest animals disappeared forever. These “megafauna” were first lost in Sahul, the supercontinent formed by Australia and New Guinea during periods of low sea level.

The causes of these extinctions have been debated for decades. Possible culprits include climate change, hunting or habitat modification by the ancestors of Aboriginal people, or a combination of the two.


Read more: What is a ‘mass extinction’ and are we in one now?


The main way to investigate this question is to build timelines of major events: when species went extinct, when people arrived, and when the climate changed. This approach relies on using dated fossils from extinct species to estimate when they went extinct, and archaeological evidence to determine when people arrived.


Read more: An incredible journey: the first people to arrive in Australia came in large numbers, and on purpose


Comparing these timelines allows us to deduce the likely windows of coexistence between megafauna and people.

We can also compare this window of coexistence to long-term models of climate variation, to see whether the extinctions coincided with or shortly followed abrupt climate shifts.

Data drought

One problem with this approach is the scarcity of reliable data due to the extreme rarity of a dead animal being fossilised, and the low probability of archaeological evidence being preserved in Australia’s harsh conditions. Read the rest of this entry »





Adult disguises

2 12 2019

Skilled ornithologists can tell the age of a bird by the look of its feathers. But many species are advancing the moult of their first adult plumage in response to global warming, and the youngsters look more similar to the adults now than two centuries ago.

R Graphics Output

The clothes don’t make the (wo)man, but how we dress sends out a lot of information about our tastes, emotional state, or financial situation. In nature, where species have evolved to exploit all kinds of physical and chemical cues, visual communication determines a wealth of feeding and reproductive strategies (1).

Birds are familiar to all of us by the beauty and variety of their plumages (see extreme examples commented by David Attenborough here, here and here), which bird fans use to tell juveniles from males, males from females and breeders from migrants. In evolutionary time, birds have gradually moved away from tree-bark browns and tree-leaf greens and, due to functional requirements, modern feathers only span about one third of the colours these animals can perceive (2). They obtain yellows, oranges, and reds from carotenoid-containing food, dark colours from melanin pigment of own synthesis, and the so-called structural colours depend on how light reflects on the barbs of the feathers (2).

Plumage, across its entire range of designs, is a factor crucial to the life history of our feathery friends and, consequently, to evaluate how and how much anthropogenic climate change is impacting them (3).

Plumage and temperature

We know that mammals and birds are modifying their fur and feathers to optimise camouflage against landscapes with more or less snow (4), but less-known are the implications of climate change for feather moulting. Read the rest of this entry »





Logbook of Australia’s ancient megafauna

20 11 2019

FosSahul_transparent_larger

Australia is home to some of the most unique species worldwide, including egg-laying mammals, tree-climbing, desert-bouncing and and burrow-digging marsupials, and huge flightless birds. While these animals are fascinating, the creatures that used to roam Australia’s landscape thousands of years ago were even more remarkable — these included wombat-like beasts as big as rhinos, birds more than two metres tall, lizards more than seven metres long, and a marsupial lion as big as a leopard.

Just how and why these animals went extinct has been challenging scientists for decades. But examining dated fossil records is one of the primary ways we can look into the past. The ever-increasing number of fossils and the advances in dating techniques have produced a wealth of material we can use to reconstruct the long-lost past.

DiprotodonEven with these data, it has been a struggle to gather enough fossils for large-scale analyses because reports of these records are usually scattered across the scientific literature, with no standardised quality control to make them comparable to each other. Designing a way to standardise these records is therefore important to avoid misleading conclusions.

The FosSahul database was first established in 2016 to try to alleviate these problems — it gathered all the fossil specimens for large animals (excluding humans) from the Late Quaternary (up to ~ 1 million years before present) across the region known as ‘Sahul’, the combined super-continent that included New Guinea and Australia when sea levels were much lower than they are today.

While FosSahul was an important step, the database needed to be updated. First, the quality rating of the fossil dates in the original version was a little subjective and lacked transparency in some cases. This is because the database did not capture enough detail to be able to reproduce all the steps leading to a particular quality rating. Second, given that new fossils are discovered regularly, updates are necessary to include the latest research. Read the rest of this entry »





What is a ‘mass extinction’ and are we in one now?

13 11 2019

(reproduced from The Conversation)

For more than 3.5 billion years, living organisms have thrived, multiplied and diversified to occupy every ecosystem on Earth. The flip side to this explosion of new species is that species extinctions have also always been part of the evolutionary life cycle.

But these two processes are not always in step. When the loss of species rapidly outpaces the formation of new species, this balance can be tipped enough to elicit what are known as “mass extinction” events.


Read more: Climate change is killing off Earth’s little creatures


A mass extinction is usually defined as a loss of about three quarters of all species in existence across the entire Earth over a “short” geological period of time. Given the vast amount of time since life first evolved on the planet, “short” is defined as anything less than 2.8 million years.

Since at least the Cambrian period that began around 540 million years ago when the diversity of life first exploded into a vast array of forms, only five extinction events have definitively met these mass-extinction criteria.

These so-called “Big Five” have become part of the scientific benchmark to determine whether human beings have today created the conditions for a sixth mass extinction.

An ammonite fossil found on the Jurassic Coast in Devon. The fossil record can help us estimate prehistoric extinction rates. Corey Bradshaw, Author provided

Read the rest of this entry »





The politics of environmental destruction

22 10 2019

C_SE 409521698 Paul Ehrlich Lecture Event - Eventbrite2

You’d think I’d get tired of this, wouldn’t you? Alas, the fight does wear me down, but I must persist.

My good friend and colleague, the legendary Professor Paul Ehrlich of Stanford University, as well as his equally legendary wife, Anne, will be joining us in Adelaide for a brief visit during their annual southern migration.

Apart from just catching up over a few good bottles of wine (oh, do those two enjoy fine wines!), we have the immense privilege of having Paul appear at two events while he’s in town.

I’m really only going to be talking about the second of the two events (the first is a Science Meets Parliament gig with me and many others at the South Australia Parliament on 12 November): a grand, public lecture and Q&A session held at Flinders University on Wednesday, 13 November.

Haven’t heard of Paul? Where have you been hiding? If by some miracle you haven’t, here’s a brief bio:

Paul Ehrlich is Bing Professor of Population Studies Emeritus, President of the Center for Conservation Biology, Department of Biology, Stanford University and Adjunct Professor, University of Technology, Sydney. He does research in population biology (includes ecology, evolutionary biology, behavior, and human ecology and cultural evolution). Ehrlich has carried out field, laboratory and theoretical research on a wide array of problems ranging from the dynamics and genetics of insect populations, studies of the ecological and evolutionary interactions of plants and herbivores, and the behavioral ecology of birds and reef fishes, to experimental studies of the effects of crowding on human beings and studies of cultural evolution, especially the evolution of norms. He is President of the Millennium Alliance for Humanity and the Biosphere and is author and coauthor of more than 1100 scientific papers and articles in the popular press and over 40 books. He is best known to his efforts to alert the public to the many intertwined drivers that are pushing humanity toward a collapse of civilization – especially overpopulation, overconsumption by the rich, and lack of economic, racial, and gender equity. Ehrlich is a Fellow of the American Academy of Arts and Sciences, the American Entomological Society and the Beijer Institute of Ecological Economics, and a member of the United States National Academy of Sciences and the American Philosophical Society.  He is a Foreign Member of the Royal Society, an Honorary Member of the British Ecological Society and an Honorary Fellow of the Royal Entomological Society.  Among his many other honours are the Royal Swedish Academy of Sciences, Crafoord Prize in Population Biology and the Conservation of Biological Diversity (an explicit replacement for the Nobel Prize); a MacArthur Prize Fellowship; the Volvo Environment Prize; UNEP Sasakawa Environment Prize; the Heinz Award for the Environment; the Tyler Prize for Environmental Achievement; the Heineken Prize for Environmental Sciences; the Blue Planet Prize;  the Eminent Ecologist award of the Ecological Society of America, the Margalef Prize in Ecology and Environmental Sciences, and the BBVA Frontiers of Knowledge Award in Ecology and Conservation Biology. Prof Ehrlich has appeared as a guest on more than 1000 TV and radio programs; he also was a correspondent for NBC News. He has given many hundreds of public lectures in the past 50 years.

I hope your jaw just dropped.

Read the rest of this entry »