Microclimates: thermal shields against global warming for small herps

22 11 2017

Thermal microhabitats are often uncoupled from above-ground air temperatures. A study focused on small frogs and lizards from the Philippines demonstrates that the structural complexity of tropical forests hosts a diversity of microhabitats that can reduce the exposure of many cold-blooded animals to anthropogenic climate warming.

Luzon forest frogs

Reproductive pair of the Luzon forest frogs Platymantis luzonensis (upper left), a IUCN near-threatened species restricted to < 5000 km2 of habitat. Lower left: the yellow-stripped slender tree lizard Lipinia pulchella, a IUCN least-concerned species. Both species have body lengths < 6 cm, and are native to the tropical forests of the Philippines. Right panels, top to bottom: four microhabitats monitored by Scheffers et al. (2), namely ground vegetation, bird’s nest ferns, phytotelmata, and fallen leaves above ground level. Photos courtesy of Becca Brunner (Platymantis), Gernot Kunz (Lipinia), Stephen Zozaya (ground vegetation) and Brett Scheffers (remaining habitats).

If you have ever entered a cave or an old church, you will be familiar with its coolness even in the dog days of summer. At much finer scales, from centimetres to millimetres, this ‘cooling effect’ occurs in complex ecosystems such as those embodied by tropical forests. The fact is that the life cycle of many plant and animal species depends on the network of microhabitats (e.g., small crevices, burrows, holes) interwoven by vegetation structures, such as the leaves and roots of an orchid epiphyte hanging from a tree branch or the umbrella of leaves and branches of a thick bush.

Much modern biogeographical research addressing the effects of climate change on biodiversity is based on macroclimatic data of temperature and precipitation. Such approaches mostly ignore that microhabitats can warm up or cool down in a fashion different from that of local or regional climates, and so determine how species, particularly ectotherms, thermoregulate (1). To illustrate this phenomenon, Brett Scheffers et al. (2) measured the upper thermal limits (typically known as ‘critical thermal maxima’ or CTmax) of 15 species of frogs and lizards native to the tropical forest of Mount Banahaw, an active volcano on Luzon (The Philippines). The > 7000 islands of this archipelago harbour > 300 species of amphibians and reptiles (see video here), with > 100 occurring in Luzon (3).

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Ecologists are gender-biased

16 11 2017

© xkcd.com

I normally don’t do this, but this is an extra-ordinary circumstance.

As many of you are already aware, Franck Courchamp and I published a paper in Nature Ecology and Evolution on Monday that ranked high-profile ecology papers. I won’t go into any details about the list here, because you can read the paper and the associated blog posts themselves.

The publication caused a bit of a stir among ecologists, evidenced by the rather high and rising Altmetrics score for the paper (driven mainly by a Boaty McBoatface-load of tweets). I haven’t done any social-media analysis, but it appears that most of the tweets were positive, a few were negative, and a non-trivial proportion of them were highly critical of the obvious male-biased nature of the list (in terms of article authors).

On that last point, we couldn’t agree more.

Which is why we have a follow-up analysis specifically addressing this gender bias, but that’s currently in review in Nature Ecology and Evolution.

In the meantime, however, and at the suggestion of possibly one of the coolest, nicest, and most logical editors in the world, Dr Patrick Goymer (Editor-in-Chief of Nature Ecology and Evolution), I’ve just posted a pre-print of our paper entitled “Gender-biased perceptions of important ecology articles” on bioRxiv.

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Postdoctoral position re-opened in Global Ecology

18 10 2017

women-are-better-codersI believe it is important to clarify a few things about the job advertisement that we are re-opening.

As many of you might recall, we advertised two positions in paleo-ecological modelling back in July — one in ecological networks, and the other in vegetation modelling.

We decided to do something a little unusual with the vegetation modelling position by only accepting applications from women. We did this expressly to increase the probability of attracting excellent women candidates, and to increase the number of women scientists in our lab.

I’m happy to say that we received many great applications for both positions, and whether or not it was related, most of the applicants for both positions were women (83%). As it turned out, we ended up offering the network position to a woman applicant, but we were unable to find an ideal candidate for the vegetation modelling job (i.e., the one that was originally targeting women only).

Our decision not to appoint anyone in the first round of applicants for the vegetation modelling position was clearly not related to the fact that it a woman-only position, mainly because we had so many excellent women candidates for both positions (and ended up hiring a woman for the position that was open to both genders). In other words, it seems to be a just one of those random things.

That said, we are still in need of a great vegetation modeller (or at least, someone who has the capacity to learn this knowledge), and so we have decided to re-open the announcement to both genders. However, it should go without saying that we particularly encourage women to apply.

The full details of the position, essential and desired criteria, and application process are available here (Vacancy Reference Number 17115). Note that the application closing date is 15 November 2017.

Please distribute this widely among your networks.

CJA Bradshaw

Two new postdoctoral positions in ecological network & vegetation modelling announced

21 07 2017


With the official start of the new ARC Centre of Excellence for Australian Biodiversity and Heritage (CABAH) in July, I am pleased to announce two new CABAH-funded postdoctoral positions (a.k.a. Research Associates) in my global ecology lab at Flinders University in Adelaide (Flinders Modelling Node).

One of these positions is a little different, and represents something of an experiment. The Research Associate in Palaeo-Vegetation Modelling is being restricted to women candidates; in other words, we’re only accepting applications from women for this one. In a quest to improve the gender balance in my lab and in universities in general, this is a step in the right direction.

The project itself is not overly prescribed, but we would like something along the following lines of inquiry: Read the rest of this entry »

It’s not all about temperature for corals

31 05 2017


Three of the coral species studied by Muir (2): (a) Acropora pichoni: Pohnpei Island, Pacific Ocean — deep-water species/IUCN ‘Near threatened’; (b) Acropora divaricate: Maldives, Indian ocean — mid-water species/IUCN ‘Near threatened’; and (c) Acropora gemmifera: Orpheus Island, Australia — shallow-water species/IUCN ‘Least Concern’. The IUCN states that the 3 species are vulnerable to climate change (acidification, temperature extremes) and demographic booms of the invading predator, the crown-of-thorns starfish Acanthaster planci. Photos courtesy of Paul Muir.

Global warming of the atmosphere and the oceans is modifying the distribution of many plants and animals. However, marine species are bound to face non-thermal barriers that might preclude their dispersal over wide stretches of the sea. Sunlight is one of those invisible obstacles for corals from the Indian and Pacific Oceans.

If we were offered a sumptuous job overseas, our professional success in an unknown place could be limited by factors like cultural or linguistic differences that have nothing to do with our work experience or expertise. If we translate this situation into biodiversity terms, one of the best-documented effects of global warming is the gradual dispersal of species tracking their native temperatures from the tropics to the poles (1). However, as dispersal progresses, many species encounter environmental barriers that are not physical (e.g., a high mountain or a wide river), and whose magnitude could be unrelated to ambient temperatures. Such invisible obstacles can prevent the establishment of pioneer populations away from the source.

Corals are ideal organisms to study this phenomenon because their life cycle is tightly geared to multiple environmental drivers (see ReefBase: Global Information System for Coral Reefs). Indeed, the growth of a coral’s exoskeleton relies on symbiotic zooxanthellae (see video and presentation), a kind of microscopic algae (Dinoflagellata) whose photosynthetic activity is regulated by sea temperature, photoperiod and dissolved calcium in the form of aragonite, among other factors.

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Spring asynchrony in migratory birds

15 05 2017

Brent geese flock in the Limfjorden (Denmark)courtesy of Kevin Clausen. The Brent goose (Branta bernicla) is a migratory goose that breeds in Arctic coasts, as well as in northern Eurasia and the Americas, starting from late May to early June. Adults are about 0.5 m long, weigh some 2 kg and live up to 30 years. Their nests are placed in the ground, where reproductive pairs incubate a single clutch (≤ 5 eggs) for a couple of months. They are herbivores, feeding on algae (mainly Zostera marina in Limfjord) and seagrass in estuaries, fjords, intertidal areas and rocky beaches during fall and winter. During summer they feed on tundra herbs, moss, lichens, as well as aquatic plants in rivers and lakes. The species is ‘Least Concern’ for the IUCN, with a global population at some 600,000 individuals.

Migratory birds synchronise their travel from non-breeding to breeding quarters with the seasonal conditions optimal for reproduction. Above all, they decide when to migrate on the basis of the climate of their wintering areas while they are there. As climate change involves earlier springs in the Arctic but not in the wintering areas, there is a lack of synchronisation that leads to a demographic decline of these birds in the polar regions where they breed.

When I think about how species respond to climate change, the song from the ClashShould I stay or should I go” comes to mind. As climate changes, species eventually have to face an ultimate choice: (i) stay and adapt to novel conditions or become locally extinct if adaptation fails, (ii) or move to other regions where climatic conditions should be more suitable. Migratory species have to face this decision every time they have to move back and forth from non-breeding to breeding grounds.

Migration is a behavioural strategy shared by different animal groups like sea turtles, mammals, amphibians, insects or birds. Species move from one area to another usually to feed and reproduce in the best climatic conditions possible. For birds, migration is a common phenomenon that typically entails large movements between breeding and wintering grounds. These vertebrates boast some of the longest migratory distances known in the animal kingdom, particularly seabirds like Artic terns, which can complete up to a round-world trip in a single migratory event between the UK and the Antarctic (1). There are several theories about the mechanisms triggering bird migration, including improving body condition and fitness through unexploited resources (2), reducing parasite load (3), minimizing predation risk (4), maximizing day-light (5), or reducing competition (6, 7). Whatever the cause, birds have to decide when the best moment to migrate is, counting only with the (usually climatic) clues they have at the departure site. Read the rest of this entry »

Noses baffled by ocean acidification

18 04 2017

Clown fish couple (Amphiprion percula) among the tentacles of anemone Heteractis magnifica in Kimbe Bay (Papua New Guinea) – courtesy of Mark McCormick. Clownfish protect anemones from predators and parasites in exchange of shelter and food. The fish tolerates the host’s venom because its skin is protected by a mucus layer some 2-3× thicker than phylogenetically related species (12); clownfish fabricate the mucus themselves and seem to obtain anemone antigens through a period of acclimation (13), but whether protection is acquired or innate is still debated. Clownfish are highly social bony fish, forming groups with one reproductive pair (up to 11 cm in length each) and several smaller, non-reproductive males. Reproduction is protandrous (also known as sequential hermaphroditism), so larvae are born male and, as soon as the reproductive female dies, her widower becomes female and the largest of the subsidiary males becomes the alpha male. The IUCN lists clownfish, generically named ‘anemone fish’, as threatened by the pet-trade industry and habitat degradation, although surprisingly, only 1 species has been assessed (A. sandaracinos). The clown anemone fish A. ocellaris is the species that inspired Nemo in the 2003 Academy-Award fiction movie – contrary to the logical expectation that the Oscars Red Carpet would generate support for conservation on behalf of Hollywood, of the 1568 species represented in the movie, only 16 % of those evaluated are threatened (14).

Smell is like noise, the more scents we breathe in one sniff, the more difficult it is to distinguish them to the point of olfactory saturation. Experimental work with clownfish reveals that the increase in dissolved carbon dioxide in seawater, mimicking ocean acidification, alters olfactory physiology, with potential cascading effects on the demography of species.

Places such as a restaurant, a hospital or a library have a characteristic bouquet, and we can guess the emotional state of other people by their scents. Smell is critical between predators and prey of many species because both have evolved to detect each other without the aid of vision. At sea, the smell of predators dissolves in water during detection, attack, capture, and ingestion of prey, and many fishes use this information to assess the risk of ending up crunched by enemy teeth (1, 2). But predator-prey interactions can be modified by changes in the chemical composition of seawater and are therefore highly sensitive to ongoing ocean acidification (see global measuring network here). Experts regard ocean acidification as the ‘other CO2 problem’ of climate change (3) — just to emphasize that anthropogenic climate-change impacts terrestrial and aquatic ecosystems alike. Acidification occurs because the ocean absorbs CO2 at a rate proportional with the concentration of this gas in the atmosphere and, once dissolved, CO2 becomes carbonic acid (H2CO3), which in turn releases protons (H+) — in simple terms, pH is the concentration of protons (see video about ocean acidification): Read the rest of this entry »