biogeography | ConservationBytes.com

Intricate dance of nature — predicting extinction risks in terrestrial ecosystems

30 06 2023

Have you ever watched a nature documentary and marvelled at the intricate dance of life unfolding on screen? From the smallest insect to the largest predator, every creature plays a role in the grand performance of our planet’s biosphere. But what happens when one of these performers disappears?

In this post, we delve into our recent article Estimating co-extinction risks in terrestrial ecosystems just published in Global Change Biology, in which we discuss the cascading effects of species loss and the risks of ‘co-extinction’.

But what does ‘co-extinction’ really mean?

Imagine an ecosystem as a giant web of interconnected species. Each thread represents a relationship between two species — for example, a bird that eats a certain type of insect, or a plant that relies on a specific species of bee for pollination. Now, what happens if one of these species in the pair disappears? The thread breaks and the remaining species loses an interaction. This could potentially lead to its co-extinction, which is essentially the domino effect of multiple species losses in an ecosystem.

A famous example of this effect can be seen with the invasion of the cane toad (Rhinella marina) across mainland Australia, which have caused trophic cascades and species compositional changes in these communities.

The direct extinction of one species, caused by effects such as global warming for example, has the potential to cause other species also to become extinct indirectly.

Read the rest of this entry »

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Tags: biodiversity, climate change, co-extinction, ecological networks, extinction cascades, networks, secondary extinctions, trophic cascades
Categories : alien species, biogeography, bottom-up ecology, climate change, climate shift, community ecology, conservation, conservation biology, decline, demography, ecology, ecosystem, environmental policy, extinction, mathematics, modelling, predation, predator, top-down ecology

Successful movers responding to climate change

16 06 2020

tropical fishes range shifts Ecologists often rely on measuring certain elements of a species’ characteristics, behaviour, or morphology to determine if these — what we call ‘traits’ — give them certain capacities to exploit their natural environments. While sometimes a bit arbitrarily defined, the traits that can be measured are many indeed, and sometimes they reveal rather interesting elements of a species’ resilience in the face of environmental change.

As we know, climate change is changing the way species are distributed around the planet, for the main (and highly simplified) reason that the environments in which they’ve evolved and to which they have adapted are changing.

In the simplest case, a warming climate means that there is a higher and higher chance you’ll experience temperatures that really don’t suit you that well (think of a koala or a flying fox baking in a tree when the thermometer reads +45° in the shade). Just like you seeking those nice, air-conditioned spaces on a scorcher of a day, species like to move to where conditions are more acceptable to their particular physiologies and behaviours.

When they can’t change fast enough, they go extinct.

Ecologists use life-history traits to predict which species have the highest probability of moving to new areas in response to climate change. Most studies into this phenomenon have largely ignored that range shifts in fact occur in sequential stages: (1) the species arrives in a new place for the first time, (2) its population increases in size (and extent), and (3) it can continue to persist in the new spot. Read the rest of this entry »

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Tags: Biogeography, climate change, Fish, marine fishes, native invasive species, range shifts, species' traits, traits, tropical fish
Categories : alien species, Australia, behaviour, bioclimatic envelope, biogeography, climate change, climate shift, coasts, community ecology, coral reefs, ecology, ecosystem, extinction, fish, food, function, invasive species, marine, monitoring, southern Australia, tropical

A plant’s adaptive traits don’t follow climate conditions as you might expect

27 03 2020

mountain

Just a quick post today, my last one for March. Like probably most of you, I’ve been trying to pretend to be as normal as possible despite the COVID-19 surrealism all around me. But even COVID-19 has shifted my research to a small degree.

But I’m not going to talk about the global pandemic right now (I can almost hear the collective sigh of relief). Instead, I’m going to go back to topic and discuss a paper that I’ve just co-authored.

Last year I went to China’s Yunnan Province where I met some fantastic colleagues at the Xishuangbanna Tropical Botanical Garden who were doing some very cool stuff with the variation in plant functional traits across environmental gradients.

Well, those colleagues invited me to participate in one those research projects, and I’m happy to say that the result has just been published in Forests.

Measuring the functional traits of different alpine trees species in the Changbai Mountains of far north-eastern China (no, I didn’t get to go there), the research set out to test how these varied among species and elevation.

Of course, one expects that different trees use different combinations of traits to survive the rigours of mountain life (high variation in temperature, freezing, wind, etc.), but generally speaking, you might expect things like xylem vessel diameter and density to change more or less monotonically (i.e., changing in a consistent manner as elevation rises or falls). This is because trees should adapt their traits to the local conditions as best they can. Read the rest of this entry »

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Tags: Changbai Mountains, China, elevational gradient, functional traits, plant traits, plants, species distribution models, trees
Categories : bioclimatic envelope, biodiversity, biogeography, climate change, climate shift, conservation, conservation biology, ecology, function, research

Influential conservation ecology papers of 2019

24 12 2019

As I’ve done for the last six years, I am publishing a retrospective list of the ‘top’ 20 influential papers of 2019 as assessed by experts in F1000 Prime (in no particular order). See previous years’ lists here: 2018, 2017, 2016, 2015, 2014, and 2013.

Decline of the North American avifauna — … the first comprehensive assessment of population change in the North American avifauna.

Scientists’ warning to humanity: microorganisms and climate change — … [highlights] the crucial role of microbial transformations in determining set points for sea temperature, pH and ocean productivity … [identifies] microbial activity as the “life support system of the biosphere”.

(Note: Lots of people hated this one, basically because it appears to be severely flawed; nonetheless, it received several recommendations on F1000): The global tree restoration potential — … illustrates the substantial potential of capturing some of the excess carbon dioxide present in the earth’s atmosphere by planting trees.

Managing the middle: a shift in conservation priorities based on the global human modification gradient — … probably the best global assessment of spatial extent of human modification of natural terrestrial environments published to date.

Five decades of northern land carbon uptake revealed by the interhemispheric CO₂ gradient — … [concludes] that northern hemisphere [sic] vegetation and soil account for the majority of the terrestrial carbon sink, rather than tropical forests (not trying to display too many sour grapes here, but we’ve already reported this for the boreal forest, and they didn’t even bother to cite us — sad panda)

Read the rest of this entry »

Comments : 3 Comments »
Tags: agriculture, biodiversity, birds, carbon, carbon uptake, climate change, climate emergency, CO2, conservation, declines, drought, extinction, Fish, fisheries, forests, insects, marine ecology, microorganisms, pesticides, range edges, trees, urban biodiversity, wilderness
Categories : agriculture, anthropocene, biodiversity, biogeography, biowealth, birds, carbon, climate change, climate shift, community ecology, connectivity, conservation, conservation biology, conservation ecology, decline, deforestation, demography, ecology, economics, ecosystem, ecosystem function, ecosystem services, environmental policy, environmental science, exploitation, extinction, extinction debt, fish, fisheries, function, habitat loss, harvest, marine, planning, pollution, protected area

Koala extinctions past, present, and future

12 06 2019

Photo by John Llewelyn

Koalas are one of the most recognised symbols of Australian wildlife. But the tree-living marsupial koala is not doing well throughout much of its range in eastern Australia. Ranging as far north as Cairns in Queensland, to as far west as Kangaroo Island in South Australia, the koala’s biggest threats today are undeniably deforestation, road kill, dog attacks, disease, and climate change.

With increasing drought, heatwaves, and fire intensity and frequency arising from the climate emergency, it is likely that koala populations and habitats will continue to decline throughout most of their current range.

But what was the distribution of koalas before humans arrived in Australia? Were they always a zoological feature of only the eastern regions?

The answer is a resounding ‘no’ — the fossil record reveal a much more complicated story.

Read the rest of this entry »

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Tags: climate envelope, Eucalypt, Eucalyptus, koala, marsupial, niche, Phascolarctos, Phascolarctos cinereus, potential niche, SDM
Categories : Australia, biodiversity, biogeography, climate change, climate shift, conservation, conservation biology, conservation ecology, decline, deforestation, ecology, extinction, fragmentation, habitat loss, mammal, modelling, niche model, palaeo-ecology, research, science, southern Australia, species distribution model, threatened species, vegetation

Save a jaguar by eating less meat

8 10 2018

My encounter with Kaayana in Kaa-Iya National Park in the Bolivian Chaco. Her cub was around but cannot be seen in the photo

I was trapped. Or so I thought.

The jaguar came towards me on the dirt road, calmly but attentively in the dusky light, her nearly full grown cub behind her. Nervous and with only a torch as defence, I held the light high above my head as she approached, trying to look taller. But she was merely curious; and, after 20 minutes, they left. I walked home in the thickening darkness, amazed at having come so close to South America’s top predator. We later named this mother jaguar ‘Kaayana’, because she lives inside Kaa-Iya National Park in the Bolivian Chaco. My fascination with jaguars has only grown since then, but the chances of encountering this incredible animal in the wild have shrunk even since that night.

A few years after that encounter, I’m back to study jaguars in the same forest, only now at the scale of the whole South American Gran Chaco. Jaguars are the third largest cats in the world and the top predators across Latin America. This means that they are essential for keeping ecosystems healthy. However, they are disappearing rapidly in parts of their range.

Understanding how and where the jaguar’s main threats — habitat destruction and hunting — affect them is fundamental to set appropriate strategies to save them. These threats are not only damaging on their own, but they sometimes act simultaneously in an area, potentially having impacts that are larger than their simple sum. For instance, a new road doesn’t only promote deforestation, it also increases hunters’ ability to get into previously inaccessible forests. Similarly, when the forest is cut for cattle ranching, ranchers often kill jaguars for fears of stock loss.

Kaayana was seen years later by Daniel Alarcón, who took much better photos of her and her new cubs

However, the interactions between these threats are still not fully understood. In our new study, just published in the journal Diversity and Distributions, we developed a new framework to quantify how and where habitat destruction and hunting risk acted together over three decades, at the expense of highly suitable jaguar habitat in the Gran Chaco. We also analyzed how well the different Chaco countries — Bolivia, Paraguay and Argentina — and their protected areas maintained key jaguar habitat. Read the rest of this entry »

Comments : 2 Comments »
Tags: Argentina, big cats, Bolivia, Chaco, Felidae, Gran Chaco, habitat loss, human-wildlife conflict, jaguar, Panthera onca, Paraguay, poaching, predators
Categories : agriculture, Amazon, biodiversity, biogeography, cat, conservation, conservation biology, decline, deforestation, development, environmental policy, exploitation, food, habitat loss, harvest, human-wildlife conflict, livestock, mammal, management, poaching, predation, predator, protected area, research, South America, top-down ecology

Legacy of human migration on the diversity of languages in the Americas

12 09 2018

quechua-foto-ale-glogster This might seem a little left-of-centre for CB.com subject matter, but hang in there, this does have some pretty important conservation implications.

In our quest to be as transdisciplinary as possible, I’ve team up with a few people outside my discipline to put together a PhD modelling project that could really help us understand how human colonisation shaped not only ancient ecosystems, but also our own ancient cultures.

Thanks largely to the efforts of Dr Frédérik Saltré here in the Global Ecology Laboratory, at Flinders University, and in collaboration with Dr Bastien Llamas (Australian Centre for Ancient DNA), Joshua Birchall (Museu Paraense Emílio Goeldi, Brazil), and Lars Fehren-Schmitz (University of California at Santa Cruz, USA), I think the student could break down a few disciplinary boundaries here and provide real insights into the causes and consequences of human expansion into novel environments.

Interested? See below for more details?

Languages are ‘documents of history’ and historical linguists have developed comparative methods to infer patterns of human prehistory and cultural evolution. The Americas present a more substantive diversity of indigenous language stock than any other continent; however, whether such a diversity arose from initial human migration pathways across the continent is still unknown, because the primary proxy used (i.e., archaeological evidence) to study modern human migration is both too incomplete and biased to inform any regional inference of colonisation trajectories. Read the rest of this entry »

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Tags: Ancient DNA, anthropology, archaeology, ecology, Genetics, human migration, indigenous languages, linguistics, PhD, PhDchat, South America, student opportunities, transdisciplinarity
Categories : Amazon, biogeography, connectivity, demography, ecology, ecosystem, Flinders University, mathematics, modelling, population dynamics, research, science, South America, statistics

Two new postdoctoral positions in ecological network & vegetation modelling announced

21 07 2017

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With the official start of the new ARC Centre of Excellence for Australian Biodiversity and Heritage (CABAH) in July, I am pleased to announce two new CABAH-funded postdoctoral positions (a.k.a. Research Associates) in my global ecology lab at Flinders University in Adelaide (Flinders Modelling Node).

One of these positions is a little different, and represents something of an experiment. The Research Associate in Palaeo-Vegetation Modelling is being restricted to women candidates; in other words, we’re only accepting applications from women for this one. In a quest to improve the gender balance in my lab and in universities in general, this is a step in the right direction.

The project itself is not overly prescribed, but we would like something along the following lines of inquiry: Read the rest of this entry »

Comments : 2 Comments »
Tags: CABAH, Centre of Excellence for Australian Biodiversity and Heritage, ecological networks, employment, Flinders University, gender, gender balance, job, jobs, mathematics, modelling, models, postdoctoral fellowship, STEM, vegetation, women in stem, women-only
Categories : Australia, biodiversity, biogeography, bottom-up ecology, climate change, community ecology, conservation, ecology, ecosystem, ecosystem function, extinction, extinction debt, Flinders University, function, genetics, harvest, jobs, mathematics, meso-predator release, minimum viable population, modelling, palaeo-ecology, population dynamics, population viability analysis, predation, predator, top-down ecology

It’s not all about temperature for corals

31 05 2017

Three of the coral species studied by Muir (2): (a) Acropora pichoni: Pohnpei Island, Pacific Ocean — deep-water species/IUCN ‘Near threatened’; (b) Acropora divaricate: Maldives, Indian ocean — mid-water species/IUCN ‘Near threatened’; and (c) Acropora gemmifera: Orpheus Island, Australia — shallow-water species/IUCN ‘Least Concern’. The IUCN states that the 3 species are vulnerable to climate change (acidification, temperature extremes) and demographic booms of the invading predator, the crown-of-thorns starfish Acanthaster planci. Photos courtesy of Paul Muir.

Global warming of the atmosphere and the oceans is modifying the distribution of many plants and animals. However, marine species are bound to face non-thermal barriers that might preclude their dispersal over wide stretches of the sea. Sunlight is one of those invisible obstacles for corals from the Indian and Pacific Oceans.

If we were offered a sumptuous job overseas, our professional success in an unknown place could be limited by factors like cultural or linguistic differences that have nothing to do with our work experience or expertise. If we translate this situation into biodiversity terms, one of the best-documented effects of global warming is the gradual dispersal of species tracking their native temperatures from the tropics to the poles (1). However, as dispersal progresses, many species encounter environmental barriers that are not physical (e.g., a high mountain or a wide river), and whose magnitude could be unrelated to ambient temperatures. Such invisible obstacles can prevent the establishment of pioneer populations away from the source.

Corals are ideal organisms to study this phenomenon because their life cycle is tightly geared to multiple environmental drivers (see ReefBase: Global Information System for Coral Reefs). Indeed, the growth of a coral’s exoskeleton relies on symbiotic zooxanthellae (see video and presentation), a kind of microscopic algae (Dinoflagellata) whose photosynthetic activity is regulated by sea temperature, photoperiod and dissolved calcium in the form of aragonite, among other factors.

Read the rest of this entry »

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Tags: biodiversity, climate change, climate disruption, Coral, coral reefs, corals, distribution, extinction, Global warming, marine, ocean
Categories : Australia, bioclimatic envelope, biodiversity, biogeography, climate change, climate shift, conservation, coral reefs, ecology, extinction, invasive species, ocean, research, tropical

Species-area & species-accumulation curves not the same

30 05 2016

I’ve just read an elegant little study that has identified the main determinants of differences in the slope of species-area curves and species-accumulation curves.

That’s a bit of a mouthful for the uninitiated, so if you don’t know much about species-area theory, let me give you a bit of background for why this is an important new discovery.

Perhaps one of the only ‘laws’ in ecology comes from the observation that as you sample from larger and larger areas of any habitat type, the number of species tends to increase. This of course originates from MacArthur & Wilson’s classic book, The Theory of Island Biography (1967), and while simple in basic concept, it has since developed into a multi-headed Hydra of methods, analysis, theory and jargon.

One of the most controversial aspects of generic species-area relationships is the effect of different sampling regimes, a problem I’ve blogged about before. Whether you are sampling once-contiguous forest of habitat patches in a ‘matrix’ of degraded landscape, a wetland complex, a coral reef, or an archipelago of true oceanic islands, the ‘ideal’ models and the interpretation thereof will likely differ, and in sometimes rather important ways from a predictive and/or applied perspective. Read the rest of this entry »

Comments : 2 Comments »
Tags: EAR, extinction, island biogeography, SAC, SAR, species-accumulation curve, species-area curve, species-area relationship
Categories : biogeography, conservation, coral reefs, ecology, endemism, extinction, extinction debt, habitat loss, island biogeography, species-area curve

Ice Age? No. Abrupt warmings and hunting together polished off Holarctic megafauna

24 07 2015

Oh shit oh shit oh shit …

Did ice ages cause the Pleistocene megafauna to go extinct? Contrary to popular opinion, no, they didn’t. But climate change did have something to do with them, only it was global warming events instead.

Just out today in Science, our long-time-coming (9 years in total if you count the time from the original idea to today) paper ‘Abrupt warmings drove Late Pleistocene Holarctic megafaunal turnover‘ demonstrates for the first time that abrupt warming periods over the last 60,000 years were at least partially responsible for the collapse of the megafauna in Eurasia and North America.

You might recall that I’ve been a bit sceptical of claims that climate changes had much to do with megafauna extinctions during the Late Pleistocene and early Holocene, mainly because of the overwhelming evidence that humans had a big part to play in their demise (surprise, surprise). What I’ve rejected though isn’t so much that climate had nothing to do with the extinctions; rather, I took issue with claims that climate change was the dominant driver. I’ve also had problems with blanket claims that it was ‘always this’ or ‘always that’, when the complexity of biogeography and community dynamics means that it was most assuredly more complicated than most people think.

I’m happy to say that our latest paper indeed demonstrates the complexity of megafauna extinctions, and that it took a heap of fairly complex datasets and analyses to demonstrate. Not only were the data varied – the combination of scientists involved was just as eclectic, with ancient DNA specialists, palaeo-climatologists and ecological modellers (including yours truly) assembled to make sense of the complicated story that the data ultimately revealed. Read the rest of this entry »

Comments : 7 Comments »
Tags: bison, cave bear, cave lion, climate change, climatology, extinction, Global warming, GRIWM, Ice Age, mammoth, megafauna, muskox, Neandertal, Signor-Lipps effect
Categories : anthropocene, Arctic, Asia, biodiversity, biogeography, boreal, Canada, climate change, climate shift, connectivity, conservation, decline, DNA, ecology, ecosystem, Europe, extinction, genetics, harvest, mammal, mathematics, metapopulation, minimum viable population, modelling, Russia, synergies, USA

Ecological processes depend on …

14 05 2014

I have been known to say (ok – I say it all the time) that ecologists should never equivocate when speaking to the public. Whether it’s in a media release, blog post, television presentation or newspaper article, just stick to ‘yes’ or ‘no’. In other words, don’t qualify your answer with some horrid statistical statement (i.e., in 95% of cases …) or say something like “… but it really depends on …”. People don’t understand uncertainty – to most people, ‘uncertainty’ means “I don’t know” or worse, “I made it all up”.

But that’s only in the movies.

In real ‘ecological’ life, things are vastly different. It’s never as straightforward as ‘yes’ or ‘no’, because ecology is complex. There are times that I forget this important aspect when testing a new hypothesis with what seem like unequivocal data, but then reality always hits.

Our latest paper is the epitome of this emergent complexity from what started out as a fairly simple question using some amazing data. What makes birds change their range¹? We looked at this question from a slightly different angle than had been done before because we had access to climate data, life-history data and most importantly, actual range change data. It’s that latter titbit that is typically missing from studies aiming to understand what drives species toward a particular fate; whether it’s a species distribution model predicting the future habitat suitability of some species as a function of climate change, or the past dynamics of some species related to its life history pace, most often the combined dynamics are missing. Read the rest of this entry »

Comments : 5 Comments »
Tags: area of occupancy, bird, birds, Britain, ecology, environment, range dynamics, United Kingdom
Categories : biodiversity, biogeography, citizen science, conservation, decline, deforestation, demography, ecology, Europe, extinction, fragmentation, habitat loss, island biogeography, management, modelling, population dynamics, science

Putting the ‘science’ in citizen science

30 04 2014

How to tell if a koala has been in your garden. © Great Koala Count

When I was in Finland last year, I had the pleasure of meeting Tomas Roslin and hearing him describe his Finland-wide citizen-science project on dung beetles. What impressed me most was that it completely flipped my general opinion about citizen science and showed me that the process can be useful.

I’m not trying to sound arrogant or scientifically elitist here – I’m merely stating that it was my opinion that most citizen-science endeavours fail to provide truly novel, useful and rigorous data for scientific hypothesis testing. Well, I must admit that I still believe that ‘most’ citizen-science data meet that description (although there are exceptions – see here for an example), but Tomas’ success showed me just how good they can be.

So what’s the problem with citizen science? Nothing, in principle; in fact, it’s a great idea. Convince keen amateur naturalists over a wide area to observe (as objectively) as possible some ecological phenomenon or function, record the data, and submit it to a scientist to test some brilliant hypothesis. If it works, chances are the data are of much broader coverage and more intensively sampled than could ever be done (or afforded) by a single scientific team alone. So why don’t we do this all the time?

If you’re a scientist, I don’t need to tell you how difficult it is to design a good experimental sampling regime, how even more difficult it is to ensure objectivity and precision when sampling, and the fastidiousness with which the data must be recorded and organised digitally for final analysis. And that’s just for trained scientists! Imagine an army of well-intentioned, but largely inexperienced samplers, you can quickly visualise how the errors might accumulate exponentially in a dataset so that it eventually becomes too unreliable for any real scientific application.

So for these reasons, I’ve been largely reluctant to engage with large-scale citizen-science endeavours. However, I’m proud to say that I have now published my first paper based entirely on citizen science data! Call me a hypocrite (or a slow learner). Read the rest of this entry »

Comments : 15 Comments »
Tags: abundance estimate, Citizen science, citizen scientist, koala, Phascolarctos cinereus, SDM, South Australia, species distribution model
Categories : Australia, biogeography, citizen science, conservation, ecology, fragmentation, mammal, mathematics, modelling, research, South Australia, southern Australia

Too small to avoid catastrophic biodiversity meltdown

27 09 2013

Chiew Larn Reservoir is surrounded by Khlong Saeng Wildlife Sanctuary and Khao Sok National Park, which together make up part of the largest block of rainforest habitat in southern Thailand (> 3500 km²). Photo: Antony Lynam

One of the perennial and probably most controversial topics in conservation ecology is when is something “too small’. By ‘something’ I mean many things, including population abundance and patch size. We’ve certainly written about the former on many occasions (see here, here, here and here for our work on minimum viable population size), with the associated controversy it elicited.

Now I (sadly) report on the tragedy of the second issue – when is a habitat fragment too small to be of much good to biodiversity?

Published today in the journal Science, Luke Gibson (of No substitute for primary forest fame) and a group of us report disturbing results about the ecological meltdown that has occurred on islands created when the Chiew Larn Reservoir of southern Thailand was flooded nearly 30 years ago by a hydroelectric dam.

As is the case in many parts of the world (e.g., Three Gorges Dam, China), hydroelectric dams can cause major ecological problems merely by flooding vast areas. In the case of Charn Liew, co-author Tony Lynam of Wildlife Conservation Society passed along to me a bit of poignant and emotive history about the local struggle to prevent the disaster.

“As the waters behind the dam were rising in 1987, Seub Nakasathien, the Superintendent of the Khlong Saeng Wildlife Sanctuary, his staff and conservationist friends, mounted an operation to capture and release animals that were caught in the flood waters.

It turned out to be distressing experience for all involved as you can see from the clips here, with the rescuers having only nets and longtail boats, and many animals dying. Ultimately most of the larger mammals disappeared quickly from the islands, leaving just the smaller fauna.

Later Seub moved to Huai Kha Khaeng Wildlife Sanctuary and fought an unsuccessful battle with poachers and loggers, which ended in him taking his own life in despair in 1990. A sad story, and his friend, a famous folk singer called Aed Carabao, wrote a song about Seub, the music of which plays in the video. Read the rest of this entry »

Comments : 6 Comments »
Tags: alien species, biodiversity, environment, extinction, extinction lag, half life, invasive species, island biogeography, mammals, relaxation, SAR, species-area relationship, Thailand
Categories : alien species, Asia, biodiversity, biogeography, conservation, extinction, extinction debt, extinction vortex, flood, fragmentation, habitat loss, invasive species, island biogeography, living dead, mammal, minimum viable population, modelling, monitoring, South East Asia, species-area curve

Biogeography comes of age

22 08 2013

This week has been all about biogeography for me. While I wouldn’t call myself a ‘biogeographer’, I certainly do apply a lot of the discipline’s techniques.

This week I’m attending the 2013 Association of Ecology’s (INTECOL) and British Ecological Society’s joint Congress of Ecology in London, and I have purposefully sought out more of the biogeographical talks than pretty much anything else because the speakers were engaging and the topics fascinating. As it happens, even my own presentation had a strong biogeographical flavour this year.

Although the species-area relationship (SAR) is only one small aspect of biogeography, I’ve been slightly amazed that after more than 50 years since MacArthur & Wilson’s famous book, our discipline is still obsessed with SAR.

I’ve blogged about SAR issues before – what makes it so engaging and controversial is that SAR is the principal tool to estimate overall extinction rates, even though it is perhaps one of the bluntest tools in the ecological toolbox. I suppose its popularity stems from its superficial simplicity – as the area of an (classically oceanic) island increases, so too does the total number of species it can hold. The controversies surrounding such as basic relationship centre on describing the rate of that species richness increase with area – in other words, just how nonlinear the SAR itself is.

Even a cursory understanding of maths reveals the importance of estimating this curve correctly. As the area of an ‘island’ (habitat fragment) decreases due to human disturbance, estimating how many species end up going extinct as a result depends entirely on the shape of the SAR. Get the SAR wrong, and you can over- or under-estimate the extinction rate. This was the crux of the palaver over Fangliang He (not attending INTECOL) & Stephen Hubbell’s (attending INTECOL) paper in Nature in 2011.

The first real engagement of SAR happened with John Harte’s maximum entropy talk in the process macroecology session on Tuesday. What was notable to me was his adamant claim that the power-law form of SAR should never be used, despite its commonness in the literature. I took this with a grain of salt because I know all about how messy area-richness data can be, and why one needs to consider alternate models (see an example here). But then yesterday I listened to one of the greats of biogeography – Robert Whittaker – who said pretty much the complete opposite of Harte’s contention. Whittaker showed results from one of his papers last year that the power law was in fact the most commonly supported SAR among many datasets (granted, there was substantial variability in overall model performance). My conclusion remains firm – make sure you use multiple models for each individual dataset and try to infer the SAR from model-averaging. Read the rest of this entry »

Comments : 2 Comments »
Tags: Biogeography, British Ecological Society, ecology, extinction, fragmentation, INTECOL, invasive species, SAR, species-area relationship
Categories : alien species, biodiversity, biogeography, conservation, deforestation, extinction, extinction debt, fragmentation, habitat loss, INTECOL, invasive species, island biogeography, living dead, mathematics, metapopulation, minimum viable population, modelling, species-area curve

Shrinking global range projected for the world’s largest fish

7 08 2013

My recently finished PhD student, Ana Sequeira, has not only just had a superb paper just accepted in Global Change Biology, she’s recently been offered (and accepted) a postdoctoral position based at the University of Western Australia‘s Oceans Institute (in partnership with AIMS and CSIRO). As any supervisor, I’m certainly pleased when a student completes her PhD, but my pride as an academic papa truly soars when she gets her first job. Well done, Ana. This post by Ana is about her latest paper.

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Following our previous whale shark work (see here, here, here, here, here, here and here), especially the recent review where we inferred global connectivity and suggest possible pathways for their migration, we have now gone a step further and modelled the habitat suitability for the species at at global scale. This paper sets a nice scene regarding current habitat suitability, which also demonstrates the potential connectivity pathways we hypothesised previously. But the paper goes much further; we extend our predictions to a future scenario for 2070 when water temperatures are expected to increase on average by 2 °C.

Global predictions of current seasonal habitat suitability for whale sharks. Black triangles indicate known aggregation locations. Solid line delineates areas where habitat suitability > 0.1 was predicted.

Regarding the current range of whale sharks (i.e., its currently suitable habitat), we already know that whale sharks span latitudes between about 35 º North to South. We also know that this geographical range has been exceeded on several occasions. What we did not know was whether conditions were suitable enough for whale sharks to cross from the Indian Ocean to the Atlantic Ocean – in other words, whether they could travel between ocean basins south of South Africa. Our global model results demonstrate that suitable habitat in this region does exist at least during the summer, thus supporting our hypotheses regarding global connectivity!

It’s true that the extensive dataset we used (30 years’ worth of whale shark sightings collected by tuna purse seiners in the three major oceans – data provided by the IRD, IOTC and SPC) has many caveats (as do all opportunistically collected data), but we went to great trouble to deal with them in this paper (you can request a copy here or access it directly here). And the overall result: the current global habitat suitability for whale sharks does agree well with current locations of whale shark occurrence, with the exception of the Eastern Pacific for where we did not have enough data to validate. Read the rest of this entry »

Comments : 3 Comments »
Tags: Atlantic Ocean, climate change, ecology, Fish, Indian Ocean, Marine biology, Pacific Ocean, range contraction, shark, Whale shark
Categories : bioclimatic envelope, biogeography, climate change, climate shift, connectivity, conservation, fish, habitat loss, management, marine, shark

Gone with the birds

1 09 2011

ebaumsworld.com

Another great post by Salvador Herrando-Pérez.

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Through each new species, evolution assembles a unique combination of genes. Ever since living forms have populated our planet (> 3 billion years), the number of combinations is incalculable. That is why evolution resembles a cocktail shaker. Contemporaneous biogeographers look for order in that shaker to explain the history of life, as much as historians look for monarchs and revolutions in a library to explain the history of humanity.

The ethnic diversity of our suburb, village or city obeys factors of different temporal extent. Recent factors such as wealth, politics (war, segregation), culture (tradition, religion), and technology (airplanes, bridges, tunnels) determine racial migration, mixing and extinction. On the other hand, pre-historical factors express the expansion of the earliest hominids from Africa to the other continents – what makes a bantu ‘bantu’, or an inuit ‘inuit’.

Present ecological conditions and the macro-evolutionary past stock the elements by which biogeography attempts to understand the mechanisms shaping the spatial distribution of species, e.g., why kangaroos are restricted to Oceania, or why you could believe you were in Spain while strolling through a Greek forest. Read the rest of this entry »

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Tags: Biogeography, biology, Charles Darwin, conservation palaeobiology, Crowberry
Categories : biodiversity, biogeography, connectivity, conservation, conservation biology

More than leftovers: getting marine parks right in Australia

7 08 2011

Image via Wikipedia

A few weeks back I cosigned a ‘statement of concern’ about the proposal for Australia’s South West Marine Region organised by Hugh Possingham. The support has been overwhelming by Australia’s marine science community (see list of supporting scientists below). I’ve reproduced the letter addressed to the Australian government – distribute far and wide if you give more than a shit about the state of our marine environment (and the economies it supports). Basically, the proposed parks are merely a settlement between government and industry where nothing of importance is really being protected. The parks are just the leftovers industry doesn’t want. No way to ensure the long-term viability of our seas.

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On 5 May 2011 the Australian Government released a draft proposal for a network of marine reserves in the Commonwealth waters of the South West bioregional marine planning region.

Australia’s South West is of global significance for marine life because it is a temperate region with an exceptionally high proportion of endemic species – species found nowhere else in the world.

Important industries, such as tourism and fisheries, depend on healthy marine ecosystems and the services they provide. Networks of protected areas, with large fully protected core zones, are essential to maintain healthy ecosystems over the long-term – complemented by responsible fisheries management¹.

The selection and establishment of marine reserves should rest on a strong scientific foundation. We are greatly concerned that what is currently proposed in the Draft South West Plan is not based on the three core science principles of reserve network design: comprehensiveness, adequacy and representation. These principles have been adopted by Australia for establishing our National Reserve System and are recognized internationally².

Specifically, the draft plan fails on the most basic test of protecting a representative selection of habitats within the bioregions of the south-west. There are no highly protected areas proposed at all in three of the seven marine bioregions lying on the continental shelf³. Overall less than 3.5% of the shelf, where resource use and biodiversity values are most intense, is highly protected. Further, six of the seven highly protected areas that are proposed on the shelf are small (< 20 km in width)⁴ and all are separated by large distances (> 200 km)⁵. The ability of such small isolated areas to maintain connectivity and fulfil the goal of protecting Australia’s marine biodiversity is limited. Read the rest of this entry »

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Tags: Australia, biodiversity, environment, Hugh Possingham, marine protected area, National Reserve System
Categories : Australia, biogeography, coasts, conservation, conservation biology, coral reefs, ecosystem function, ecosystem services, environmental policy, exploitation, extinction, marine, marine protected area, MPA, protected area, southern Australia

生态学 = ‘Ecology’ in China

13 05 2011

I’m just heading home after a very inspiring workshop organised by Fangliang He at Sun Yat-sen University in Guangzhou, China (I’m writing this from the Qantas Club in the Hong Kong airport).

Before I proceed to regale you with the salient details of the ‘International Symposium for Biodiversity and Theoretical Ecology‘, I am compelled to state publicly that I offer my sincerest condolences to Fangliang and his family; unfortunately Fangliang’s brother passed away while we were at the workshop and so Fangliang wasn’t able to spend much time reaping the fruits of his organisational labour. If you know Fangliang, please send him a supporting email.

That sad note aside, I am delighted to say that the workshop was compelling, challenging and also rather fortuitous. I was one of many overseas invitees, and I must say that I was at times overwhelmed by the size of the brains they managed to pack into the auditorium. Many colleagues I didn’t know attended, and I hope that many will become collaborators. The international invitees were: Read the rest of this entry »

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Tags: biodiversity, China, ecology, environment, Fangliang He, Sun Yat-sen University
Categories : alien species, biodiversity, biogeography, China, climate change, conference, demography, ecology, ecosystem function, extinction, invasive species, mathematics, modelling, neutral theory, niche model, population dynamics, speciation, tropical

How fast are we losing species anyway?

28 03 2011

I’ve indicated over the last few weeks on Twitter that a group of us were recently awarded funding from the Australian Centre for Ecological Synthesis and Analysis – ACEAS – (much like the US version of the same thing – NCEAS) to run a series of analytical workshops to estimate, with a little more precision and less bias than has been done previously, the extinction rates of today’s biota relative to deep-time extinctions.

So what’s the issue? The Earth’s impressive diversity of life has experienced at least five mass extinction events over geological time. Species’ extinctions have kept pace with evolution, with more than 99 % of all species that have ever existed now gone (Bradshaw & Brook 2009). Despite general consensus that biodiversity has entered the sixth mass extinction event because of human-driven degradation of the planet, estimated extinction rates remain highly imprecise (from 100s to 10000s times background rates). This arises partly because the total number of species is unknown for many groups, and most extinctions go unnoticed.

So how are we going to improve on our highly imprecise estimates? One way is to look at the species-area relationship (SAR), which to estimate extinction requires one to extrapolate back to the origin in taxon- and region-specific SARs (e.g., with a time series of deforestation, one can estimate how many species would have been lost if we know how species diversity changes in relation to habitat area). Read the rest of this entry »