Animating models of ecological change

6 12 2021

Flinders University Global Ecology postdoc, Dr Farzin Shabani, recently created this astonishing video not only about the results of his models predicting vegetation change in northern Australia as a function of long-term (tens of thousands of years) climate change, but also on the research journey itself!

He provides a brief background to how and why he took up the challenge:


Science would be a lot harder to digest without succinct and meaningful images, graphs, and tables. So, being able to visualise both inputs and outputs of scientific models to cut through the fog of data is an essential element of all science writing and communication. Diagrams help us understand trends and patterns much more quickly than do raw data, and they assist with making comparisons.

During my academic career, I have studied many different topics, including natural hazards (susceptibility & vulnerability risks), GIS-based ensemble modelling, climate-change impacts, environmental modelling at different temporal and spatial scales, species-distribution modelling, and time-series analysis. I use a wide range of graphschartsplotsmaps and tables to transfer the key messages.

For my latest project, however, I was given the opportunity to make a short animation and visualise my results and the journey itself. I think that my animation inspires a sense of wonder, which is among the most important goals of science education. I also think that my animation draws connections to real-life problems (e.g., ecosystem changes as a product of climate change), and also develops an appreciation of the scientific process itself.

Take a look at let me know what you think!

Read the rest of this entry »




Influential conservation ecology papers of 2019

24 12 2019

Bradshaw-Waves breaking on rocks Macquarie Island
As I’ve done for the last six years, I am publishing a retrospective list of the ‘top’ 20 influential papers of 2019 as assessed by experts in F1000 Prime (in no particular order). See previous years’ lists here: 20182017, 20162015, 2014, and 2013.

Read the rest of this entry »





Nothing like a good forest

31 07 2019

Our history and culture are intimately tied to the planet’s forests and the services they provide to all living beings. In modern times, forests also help combat the impacts of anthropogenic climate change, not only by acting as powerful sinks of the carbon excess resulting from our greenhouse-gas emissions, but also as thermal shields we and many other species can benefit from.

55_ForestBufferingPhotoPortadaQuercusCoverProposed2

Understory of the laurel forest in Garajonay National Park (La Gomera, Canary Islands) – also part of the World Network of Biosphere Reserves since 2012. The fog, combined with the cloud belt blowing from the Atlantic Ocean against the mountains (Garajonay is the highest peak at 1500 m), creates a mesic microclimate crucial for plant endemism. Forest canopies reinforce humidity and buffer temperature variation for many species. Photo: Paco Rodríguez.

If we were to choose a house to live, most would likely opt for one with water and electricity supply, noiseless nights, nearby leisure and shopping, and easy communication by public transport. Lacking only one of those aspects could be off-putting.

In truth, those who have the privilege of living in a stable household value it by the full set of available commodities. Similarly, the value of an ecosystem rests on its entire repertoire of ecological functions (1). And this is particularly so for forest ecosystems.

The ecological value of a forest relies on the collection of its native characteristics (2): how many autochthonous and mature trees it can host, how much photosynthesis it fuels, how many pollinisers it feeds, how much soil and water it creates and retains, and many more (3). Read the rest of this entry »





Biodiversity offsetting is off-putting

5 11 2018

Ancient-woodland-has-movedBiodiversity offsets are becoming more popular in Australia and elsewhere as a means to raise money for conservation and restoration while simultaneously promoting economic development (1). However, there are many perverse consequences for biodiversity if they are not set up carefully (1-3).

Biodiversity ‘offsets’ are intended to work in a similar way to carbon offsets1, in that the destruction of a part of an ecosystem (e.g., a native forest or grassland, or a wetland) can be offset by paying to fund the restoration of another, similar ecosystem elsewhere. As such, approval to clear native vegetation usually comes with financial and other conditions.

But there are several problems with biodiversity offsetting, including the inconvenient fact that creating an equivalent ecosystem somewhere takes substantially longer than it does to destroy one somewhere else (e.g., 4). While carbon emitted in one place is essentially the same as that sequestered elsewhere, a forest can take hundreds of years to develop the same biodiversity values and ecological functions it had prior to destruction. Read the rest of this entry »





The European Union just made bioenergy worse for biodiversity

21 08 2018

bioenergy2While some complain that the European Union (EU) is an enormous, cumbersome beast (just ask the self-harming Brexiteers), it generally has some rather laudable legislative checks and balances for nature conservation. While far from perfect, the rules applying to all Member States have arguably improved the state of both European environments, and those from which Europeans source their materials.

But legislation gets updated from time to time, and not always in the ways that benefit biodiversity (and therefore, us) the most. This is exactly what’s just happened with the new EU Renewable Energy Directive (RED) released in June this year.

Now, this is the point where most readers’ eyes glaze over. EU policy discussions are exceedingly dry and boring (I’ve dabbled a bit in this arena before, and struggled to stay awake myself). But I’ll try to lighten your required concentration load somewhat by being as brief and explanatory as possible, but please stay with me — this shit is important.

In fact, it’s so important that I joined forces with some German colleagues with particular expertise in greenhouse-gas accounting and EU policy — Klaus Hennenberg and Hannes Böttcher1 of Öko-Institut (Institute of Applied Ecology) in Darmstadt — to publish an article available today in Nature Ecology and Evolution.

bioenergy4So back to the RED legislation. The original ‘RED 2009‘ covered reductions of greenhouse-gas emissions and the mitigation of negative impacts on areas of high biodiversity value, such as primary forests, protected areas, and highly biodiverse grasslands, and for areas of high carbon stock like wetlands, forests, and peatlands.

But RED 2009 was far from what we might call ‘ambitious’, because globally mandatory criteria on water, soil and social aspects for agriculture and forestry production were excluded to avoid conflicts with rules of the World Trade Organization.

Nor did RED 2009 apply to all bioenergy types, and only included biofuels used in transport, including gaseous and solid fuels, and bioliquids used for electricity, heating, and cooling. But RED 2009 requirements also applied to all raw materials sourced from agriculture and forestry, especially as forest biomass is explicitly mentioned as a raw material for the production of advanced biofuels in the RED 2009 extension from 2015.

Thus, one could conceivably call RED 2009 criteria ‘minimum safeguards’.

But as of June this year, the EU accepted a 2016 proposal to recast RED 2009 into what is now called ‘RED II’. While the revisions might look good on paper by setting new incentives in transport (advanced biofuels) and in heating and cooling that will likely increase the use of biomass sourced from forests, and by extending the directive on solid and gaseous biomass, the amendments unfortunately take some huge leaps backwards in terms of sustainability requirements.

These include the following stuff-ups: Read the rest of this entry »





Influential conservation ecology papers of 2017

27 12 2017

Gannet Shallow Diving 03
As I have done for the last four years (20162015, 2014, 2013), here’s another retrospective list of the top 20 influential conservation papers of 2017 as assessed by experts in F1000 Prime.

Read the rest of this entry »





Influential conservation ecology papers of 2016

16 12 2016

cheetah_shutterstock_37268149As I have done for the last three years (2015, 2014, 2013), here’s another retrospective list of the top 20 influential conservation papers of 2016 as assessed by experts in F1000 Prime.

Read the rest of this entry »





Keeping India’s forests

9 08 2016

I’ve just returned from a short trip to the National Centre for Biological Sciences (NCBS) in Bangalore, Karnataka, one of India’s elite biological research institutes.

Panorama of a forested landscape (Savandurga monolith in the background) just south of Bangalore, Karnataka (photo: CJA Bradshaw)

Panorama of a forested landscape (Savandurga monolith in the background) just south of Bangalore, Karnataka (photo: CJA Bradshaw)

I was invited to give a series of seminars (you can see the titles here), and hopefully establish some new collaborations. My wonderful hosts, Deepa Agashe & Jayashree Ratnam, made sure I was busy meeting nearly everyone I could in ecology and evolution, and I’m happy to say that collaborations have begun. I also think NCBS will be a wonderful conduit for future students coming to Australia.

It was my first time visiting India1, and I admit that I had many preconceptions about the country that were probably unfounded. Don’t get me wrong — many of them were spot on, such as the glorious food (I particularly liked the southern India cuisine of dhosa, iddly & the various fruit-flavoured semolina concoctions), the insanity of urban traffic, the juxtaposition of extreme wealth and extreme poverty, and the politeness of Indian society (Indians have to be some of the politest people on the planet).

But where I probably was most at fault of making incorrect assumptions was regarding the state of India’s natural ecosystems, and in particular its native forests and grasslands. Read the rest of this entry »





Seeing the wood for the trees

11 07 2016

The Forest Synopsis: Photo of the Anamalai Tiger Reserve, India, by Claire Wordley

The Forest Synopsis: Photo of the Anamalai Tiger Reserve, India, by Claire Wordley

From the towering kapoks of South America to the sprawling banyans of South Asia, from misty cloud forests to ice-covered pines, forests are some of the most diverse and important ecosystems on Earth. However, as conservationists and foresters try to manage, conserve and restore forests across the world, they often rely on scanty and scattered information to inform their decisions, or indeed, no information at all. This could all change.

This week sees the launch of the Forest Synopsis from Conservation Evidence, a free resource collating global scientific evidence on a wide range of conservation-related actions. These aim to include all interventions that conservationists and foresters are likely to use, such as changing fire regimes, legally protecting forests or encouraging seed-dispersing birds into degraded forests.

Making conservation work

“We hear a lot about how important it is to do evidence-based conservation”, says Professor Bill Sutherland at the University of Cambridge, UK, “but in reality getting a handle on what works is not easy. That’s why we set up Conservation Evidence, to break down the barriers between conservationists and the scientific evidence that they need to do their jobs.” Read the rest of this entry »





One-two carbon punch of defaunation

30 04 2016

1-2 punchI’ve just read a well-planned and lateral-thinking paper in Nature Communications that I think readers of CB.com ought to appreciate. The study is a simulation of a complex ecosystem service that would be nigh impossible to examine experimentally. Being a self-diagnosed fanatic of simulation studies for just such purposes, I took particular delight in the results.

In many ways, the results of the paper by Osuri and colleagues are intuitive, but that should never be a reason to avoid empirical demonstration of a suspected phenomenon because intuition rarely equals fact. The idea itself is straightforward, but takes more than a few logical steps to describe: Read the rest of this entry »





Influential conservation papers of 2015

25 12 2015

most popularAs I did last year and the year before, here’s another arbitrary, retrospective list of the top 20 influential conservation papers of 2015 as assessed via F1000 Prime.

Read the rest of this entry »





National commitment to conservation brings biodiversity benefits

16 06 2015

united-nations-dayWhat makes some conservation endeavours successful where so many fail to protect biodiversity? Or, how long is a piece of string?

Yes, it’s a difficult question because it’s not just about the biology – such as resilience and area relationships – in fact, it’s probably more about the socio-economic setting that will ultimately dictate how the biodiversity in any particular area fares in response to disturbance.

In the case of protected areas (that I’ll just refer to as ‘reserves’ for the remainder of this post), there’s been a lot of work done about the things that make them ‘work’ (or not) in terms of biodiversity preservation. Yes, we can measure investment, how much the community supports and is involved with the reserve, how much emphasis is put on enforcement, the types of management done within (and outside) of the reserves, et ceteraet cetera. All of these things can (and have to some extent) been correlated with indices of the fate of the biodiversity within reserves, such as rates and patterns of deforestation, the amount of illegal hunting, and the survival probability of particular taxa.

But the problem with these indices is that there are just indices – they probably do not encapsulate the overall ‘health’ of the biodiversity within a reserve (be that trends in the overall abundance of organisms, the resilience of the community as a whole to future disturbances, or the combined phylogenetic diversity of the ecosystem). This is because there are few long-term monitoring programmes of sufficient taxonomic and temporal breadth to summarise these components of complex ecosystems (i.e., ecology is complex). It’s no real surprise, and even though we should put a lot more emphasis on targeted, efficient, long-term biodiversity monitoring inside and outside of all major biodiversity reserves, the cold, hard truth of it is that we’ll never manage to get the required systems in place. Humanity just doesn’t value it enough. Read the rest of this entry »





Missing the forest despite its trees

21 04 2015

An exchange on Alert-Conservation.org over the intactness of boreal forests has just erupted. Bill Laurance asked me to weigh in as an independent appraiser of the debate, so I copy my thoughts below. You can read the original exchange between Jeff Wells and Nick Haddad (& colleagues) here.

Despite its immense size, there is little doubt that the ugly second cousin of forest conservation is the boreal region covering much of Alaska, Canada, Fennoscandia and Russia. Indeed, extending some 1.4 billion hectares, of which well over 60% is found in Russia alone (1, 2), the entirety of the boreal forest is more than double the area of the Amazon forest. Yet despite this massive expanse, the impressive biota it shelters (2), and its important contribution to the global carbon (1), nitrogen (3) and oxygen (4) cycles, the boreal is an oft-overlooked region in terms of global conservation priorities and possibilities (5).

The exchange between Haddad & Sexton and Wells regarding the former researchers’ recent paper (6) highlights this problem, of which even many expert ecologists are often only vaguely aware. Wells takes particular issue with Haddad and colleagues’ assertion that the boreal forest is highly fragmented, claiming to the contrary that the (North America) boreal forest is “… truly intact … ”. While Haddad et al. respond that they did not differentiate between ‘natural’ and human-caused fragmentation, my view is that the exchange misses some important concerns about the state of the boreal forest.

Wells correctly points out that the boreal zone in North America is “massive”, but can his other claim – that it is “truly intact” – stand up to scrutiny? Citing one of my own papers from 2009 (2) to demonstrate (correctly) that the boreal forest of North America holds a stunning array of species, Wells neglects to highlight that in that same paper we also identified the extensive, artificial fragmentation that has occurred there and in other parts of the boreal zone over the last few decades. For example, we showed clearly that only 44% of the entire biome is considered to be ‘intact’, defining the term precisely as “areas ≥ 500 km2, internally undivided by infrastructure (e.g., roads) and with linear dimensions ≥ 10 km”. Satellite imagery has also confirmed that between 2000 and 2005, the boreal biome experienced the largest area of gross forest cover loss compared to any other (7). Despite recent evidence that so-called edge effects (characteristics of a disturbed matrix that penetrate some distance into habitat fragments) are probably of a smaller spatial magnitude in boreal compared to other biomes (8), it is disingenuous to claim that North America’s boreal forests are “truly intact”. Read the rest of this entry »





Earth’s second lung has emphysema

19 02 2015

© WWF

© WWF

Many consider forests as the ‘lungs’ of the planet – the idea that trees and other plants take up carbon and produce oxygen (the carbon and oxygen cycles). If we are to be fair though, the oceans store about 93% of the Earth’s carbon pool (excluding the lithosphere and fossil fuels) and oceanic phytoplankton produces between 50 and 80% of the oxygen in the atmosphere. For comparison, the terrestrial biosphere – including forests – stores only about 5% of the Earth’s carbon, and produces most of the remainder of atmospheric oxygen.

So there’s no denying that the biggest player in these cycles is the ocean, but that’s not the topic of today’s post. Instead, I’m going to focus on the terrestrial biosphere, and in particular, the carbon storage and flux of forests.

Now it’s pretty well established that tropical forests are major players in the terrestrial carbon cycle, with the most accepted estimates of about 55% the terrestrial carbon stock stored therein. The extensive boreal forest, covering most of the northern half of North America, most of Scandinavia and a huge chunk of Russia, comes in globally at about 33%, and temperate forests store most of the remainder.

That is, until now. Read the rest of this entry »





It’s all about the variation, stupid

12 01 2015

val-1-3It is one of my long-suffering ecological quests to demonstrate to the buffoons in government and industry that you can’t simply offset deforestation by planting another forest elsewhere. While it sounds attractive, like carbon offsetting or even water neutrality, you can’t recreate a perfectly functioning, resilient native forest no matter how hard you try.

I’m not for a moment suggesting that we shouldn’t reforest much of what we’ve already cut down over the last few centuries; reforestation is an essential element of any semblance of meaningful terrestrial ecological restoration. Indeed, without a major commitment to reforestation worldwide, the extinction crisis will continue to spiral out of control.

What I am concerned about, however, is that administrators continue to push for so-called ‘biodiversity offsets’ – clearing a forest patch here for some such development, while reforesting or even afforesting another degraded patch there. However, I’ve blogged before about studies, including some of my own, showing that one simply cannot replace primary forests in terms of biodiversity and long-term carbon storage. Now we can add resilience to that list.

While I came across this paper a while ago, I’ve only found the time to blog about it now. Published in PLoS One in early December, the paper Does forest continuity enhance the resilience of trees to environmental change?1 by von Oheimb and colleagues shows clearly that German oak forests that had been untouched for over 100 years were more resilient to climate variation than forests planted since that time. I’ll let that little fact sink in for a moment … Read the rest of this entry »





Influential conservation papers of 2014

22 12 2014

splash2Another year, another arbitrary retrospective list – but I’m still going to do it. Based on the popularity of last year’s retrospective list of influential conservation papers as assessed through F1000 Prime, here are 20 conservation papers published in 2014 that impressed the Faculty members.

Once again for copyright reasons, I can’t give the whole text but I’ve given the links to the F1000 assessments (if you’re a subscriber) and of course, to the papers themselves. I did not order these based on any particular criterion.

Read the rest of this entry »





Biodiversity Hotspots have nearly burnt out

10 07 2014

dying embersI recently came across a really important paper that might have flown under the radar for many people. For this reason, I’m highlighting it here and will soon write up a F1000 Recommendation. This is news that needs to be heard, understood and appreciated by conservation scientists and environmental policy makers everywhere.

Sean Sloan and colleagues (including conservation guru, Bill Laurance) have just published a paper entitled Remaining natural vegetation in the global biodiversity hotspots in Biological Conservation, and it we are presented with some rather depressing and utterly sobering data.

Unless you’ve been living under a rock for the past 20 years, you’ll have at least heard of the global Biodiversity Hotspots (you can even download GIS layers for them here). From an initial 10, to 25, they increased penultimately to 34; most recently with the addition of the Forests of East Australia, we now have 35 Biodiversity Hotspots across the globe. The idea behind these is to focus conservation attention, investment and intervention in the areas with the most unique species assemblages that are simultaneously experiencing the most human-caused disturbances.

Indeed, today’s 35 Biodiversity Hotspots include 77 % of all mammal, bird, reptile and amphibian species (holy shit!). They also harbour about half of all plant species, and 42 % of endemic (not found anywhere else) terrestrial vertebrates. They also have the dubious honour of hosting 75 % of all endangered terrestrial vertebrates (holy, holy shit!). Interestingly, it’s not just amazing biological diversity that typifies the Hotspots – human cultural diversity is also high within them, with about half of the world’s indigenous languages found therein.

Of course, to qualify as a Biodiversity Hotspot, an area needs to be under threat – and under threat they area. There are now over 2 billion people living within Biodiversity Hotspots, so it comes as no surprise that about 85 % of their area is modified by humans in some way.

A key component of the original delimitation of the Hotspots was the amount of ‘natural intact vegetation’ (mainly undisturbed by humans) within an area. While revolutionary 30 years ago, these estimates were based to a large extent on expert opinions, undocumented assessments and poor satellite data. Other independent estimates have been applied to the Hotspots to estimate their natural intact vegetation, but these have rarely been made specifically for Hotspots, and they have tended to discount non-forest or open-forest vegetation formations (e.g., savannas & shrublands).

So with horribly out-of-date vegetation assessments fraught with error and uncertainty, Sloan and colleagues set out to estimate what’s really going on vegetation-wise in the world’s 35 Biodiversity Hotspots. What they found is frightening, to say the least.

Read the rest of this entry »





Incentivise to keep primary forests intact

7 02 2014

The Amazon rainforest. Photo by Rhett A. Butler

I know – ‘incentivise’ is one of those terrible wank words of business speak. But to be heard by the economically driven, one must learn their guttural and insensitive language. I digress …

Today’s post is merely a repost of an interview I did for the new Mongabay.com series ‘Next Big Idea in Forest Conservation‘. I’m honoured to have been selected for an interview along with the likes of Bill Laurance and Stuart Pimm.

Consider this my conservation selfie.

An Interview with Corey Bradshaw

Mongabay.com: What is your background?

Corey Bradshaw: I have a rather eclectic background in conservation ecology. I grew up in the wilds of western Canada, the son of a trapper. My childhood experiences initially gave me a primarily consumptive view of the environment from trapping, fishing and hunting, but I learned that without intact environmental functions, these precious resources quickly degrade or disappear. This ironic appreciation of natural processes would later lead me into academia and the pursuit of reducing the rate of the extinction crisis.

I completed my first degrees in ecology in Montréal and the University of Alberta, followed by a PhD in New Zealand at the University of Otago. After deciding to pursue the rest of my career in the Southern Hemisphere, I completed my postdoctoral fellowship at the University of Tasmania. Multiple field seasons in the subantarctic and Antarctica probably assisted in a giving me a burgeoning desire to change gears, so I left for the tropics of northern Australia to begin a position at Charles Darwin University. Being introduced there to conservation greats like Navjot Sodhi (sadly, now deceased), Barry Brook and David Bowman turned my research interests on their ear. I quickly became enamoured with quantitative conservation ecology, applying my skills in mathematics to the plight of the world’s ecosystems. Nowhere did the problems seem more intractable than in the tropics.

I am now based at the University of Adelaide (since 2008) and have a vibrant research lab where we apply our quantitative skills to everything from conservation ecology, climate change, energy provision, human population trends, ecosystem services, sustainable agriculture, human health, palaeoecology, carbon-based conservation initiatives and restoration techniques.

Mongabay.com: How long have you worked in tropical forest conservation and in what geographies? What is the focus of your work? Read the rest of this entry »





The biggest go first

11 12 2012

© James Cameron

© James Cameron

The saying “it isn’t rocket science” is a common cliché in English to state, rather sarcastically, that something isn’t that difficult (with the implication that the person complaining about it, well, shouldn’t). But I really think we should change the saying to “it isn’t ecology”, for ecology is perhaps one of the most complex disciplines in science (whereas rocket science is just ‘complicated’). One of our main goals is to predict how ecosystems will respond to change, yet what we’re trying to simplify when predicting is the interactions of millions of species and individuals, all responding to each other and to their outside environment. It becomes quickly evident that we’re dealing with a system of chaos. Rocket science is following recipes in comparison.

Because of this complexity, ecology is a discipline plagued by a lack of generalities. Few, if any, ecological laws exist. However, we do have an abundance of rules of thumb that mostly apply in most systems. I’ve written about a few of them here on ConservationBytes.com, such as the effect of habitat patch size on species diversity, the importance of predators for maintaining ecosystem stability, and that low genetic diversity doesn’t exactly help your chances of persisting. Another big one is, of course, that in an era of rapid change, big things tend to (but not always – there’s that lovely complexity again) drop off the perch before smaller things do.

The prevailing wisdom is that big species have slower life history rates (reproduction, age at first breeding, growth, etc.), and so cannot replace themselves fast enough when the pace of their environment’s change is too high. Small, rapidly reproducing species, on the other hand, can compensate for higher mortality rates and hold on (better) through the disturbance. Read the rest of this entry »








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