It’s not always best to be the big fish

3 02 2016

obrien_fish_2Loosely following the theme of last week’s post, it’s now fairly well established that humans tend to pick on the big species first.

From fewer big trees, declines of big carnivores, elephant & rhino poaching, to fishing down the web, big species tend to cop it hardest when it comes to human-caused ecological disturbance.

While there are a lot of different combinations of traits that make some species more vulnerable to extinction than others (see examples for legumes, amphibians, sharks & teleosts, and mammals), one of the main ones is species size.

Generally speaking, larger species tend to produce fewer offspring and breed later in life than smaller species. This means that despite larger species tending to live longer than their smaller counterparts, their ‘slow’ reproductive output means that they are generally more susceptible to rapid environmental change (mainly via human intervention). In other words, their capacity for self-replacement is often too low to counteract the offtake from direct exploitation or habitat loss.

Despite a reasonable scientific understanding of this extinction-risk principle, the degree to which human disturbance affects species’ distributions is much less well quantified, and this is especially true for marine species.

I’m proud to announce another fascinating paper led by my postdoc, Camille Mellin, that has just come out online in Nature CommunicationsHumans and seasonal climate variability threaten large-bodied coral reef fish with small ranges.

With the world’s largest combined dataset of coral reef fish surveys for the entire Indo-Pacific (including the coral reef fish biodiversity hotspot — the Coral Triangle), we examined which conditions best described the distribution of fishes over a range of body sizes. Read the rest of this entry »

Biogeography comes of age

22 08 2013

penguin biogeographyThis week has been all about biogeography for me. While I wouldn’t call myself a ‘biogeographer’, I certainly do apply a lot of the discipline’s techniques.

This week I’m attending the 2013 Association of Ecology’s (INTECOL) and British Ecological Society’s joint Congress of Ecology in London, and I have purposefully sought out more of the biogeographical talks than pretty much anything else because the speakers were engaging and the topics fascinating. As it happens, even my own presentation had a strong biogeographical flavour this year.

Although the species-area relationship (SAR) is only one small aspect of biogeography, I’ve been slightly amazed that after more than 50 years since MacArthur & Wilson’s famous book, our discipline is still obsessed with SAR.

I’ve blogged about SAR issues before – what makes it so engaging and controversial is that SAR is the principal tool to estimate overall extinction rates, even though it is perhaps one of the bluntest tools in the ecological toolbox. I suppose its popularity stems from its superficial simplicity – as the area of an (classically oceanic) island increases, so too does the total number of species it can hold. The controversies surrounding such as basic relationship centre on describing the rate of that species richness increase with area – in other words, just how nonlinear the SAR itself is.

Even a cursory understanding of maths reveals the importance of estimating this curve correctly. As the area of an ‘island’ (habitat fragment) decreases due to human disturbance, estimating how many species end up going extinct as a result depends entirely on the shape of the SAR. Get the SAR wrong, and you can over- or under-estimate the extinction rate. This was the crux of the palaver over Fangliang He (not attending INTECOL) & Stephen Hubbell’s (attending INTECOL) paper in Nature in 2011.

The first real engagement of SAR happened with John Harte’s maximum entropy talk in the process macroecology session on Tuesday. What was notable to me was his adamant claim that the power-law form of SAR should never be used, despite its commonness in the literature. I took this with a grain of salt because I know all about how messy area-richness data can be, and why one needs to consider alternate models (see an example here). But then yesterday I listened to one of the greats of biogeography – Robert Whittaker – who said pretty much the complete opposite of Harte’s contention. Whittaker showed results from one of his papers last year that the power law was in fact the most commonly supported SAR among many datasets (granted, there was substantial variability in overall model performance). My conclusion remains firm – make sure you use multiple models for each individual dataset and try to infer the SAR from model-averaging. Read the rest of this entry »

Gone with the birds

1 09 2011

Another great post by Salvador Herrando-Pérez.

Through each new species, evolution assembles a unique combination of genes. Ever since living forms have populated our planet (> 3 billion years), the number of combinations is incalculable. That is why evolution resembles a cocktail shaker. Contemporaneous biogeographers look for order in that shaker to explain the history of life, as much as historians look for monarchs and revolutions in a library to explain the history of humanity.

The ethnic diversity of our suburb, village or city obeys factors of different temporal extent. Recent factors such as wealth, politics (war, segregation), culture (tradition, religion), and technology (airplanes, bridges, tunnels) determine racial migration, mixing and extinction. On the other hand, pre-historical factors express the expansion of the earliest hominids from Africa to the other continents – what makes a bantu ‘bantu’, or an inuit ‘inuit’.

Present ecological conditions and the macro-evolutionary past stock the elements by which biogeography attempts to understand the mechanisms shaping the spatial distribution of species, e.g., why kangaroos are restricted to Oceania, or why you could believe you were in Spain while strolling through a Greek forest. Read the rest of this entry »