living dead | ConservationBytes.com

Should we bring back the thylacine? We asked 5 experts

17 08 2022

In a newly announced partnership with Texas biotech company Colossal Biosciences, Australian researchers are hoping their dream to bring back the extinct thylacine is a “giant leap” closer to fruition.

Scientists at University of Melbourne’s TIGRR Lab (Thylacine Integrated Genetic Restoration Research) believe the new partnership, which brings Colossal’s expertise in CRISPR gene editing on board, could result in the first baby thylacine within a decade.

The genetic engineering firm made headlines in 2021 with the announcement of an ambitious plan to bring back something akin to the woolly mammoth, by producing elephant-mammoth hybrids or “mammophants”.

But de-extinction, as this type of research is known, is a highly controversial field. It’s often criticised for attempts at “playing God” or drawing attention away from the conservation of living species. So, should we bring back the thylacine? We asked five experts.

Read the rest of this entry »

Comments : 2 Comments »
Tags: Australia, biodiversity, climate change, conservation, de-extinction, deforestation, ecology, environment, extinction, Global warming, science, Thylacine
Categories : Australia, biodiversity, climate change, cloning, conservation, conservation biology, conservation ecology, deforestation, ecology, ethics, extinction, genetic diversity, genetics, habitat loss, inbreeding depression, livestock, living dead, mammal, population viability analysis, science

Can we resurrect the thylacine? Maybe, but it won’t help the global extinction crisis

9 03 2022

(published first on The Conversation)

Last week, researchers at the University of Melbourne announced that thylacines or Tasmanian tigers, the Australian marsupial predators extinct since the 1930s, could one day be ushered back to life.

The thylacine (*Thylacinus cynocephalus*), also known as the ‘Tasmanian tiger’ (it was neither Tasmanian, because it was once common in mainland Australia, nor was it related to the tiger), went extinct in Tasmania in the 1930s from persecution by farmers and habitat loss. Art by Eleanor (Nellie) Pease, University of Queensland.
Centre of Excellence for Australian Biodiversity and Heritage

The main reason for the optimism was the receipt of a A$5 million philanthropic donation to the research team behind the endeavour.

Advances in mapping the genome of the thylacine and its living relative the numbat have made the prospect of re-animating the species seem real. As an ecologist, I would personally relish the opportunity to see a living specimen.

The announcement led to some overhyped headlines about the imminent resurrection of the species. But the idea of “de-extinction” faces a variety of technical, ethical and ecological challenges. Critics (like myself) argue it diverts attention and resources from the urgent and achievable task of preventing still-living species from becoming extinct.

The rebirth of the bucardo

The idea of de-extinction goes back at least to the the creation of the San Diego Frozen Zoo in the early 1970s. This project aimed to freeze blood, DNA, tissue, cells, eggs and sperm from exotic and endangered species in the hope of one day recreating them.

The notion gained broad public attention with the first of the Jurassic Park films in 1993. The famous cloning of Dolly the sheep reported in 1996 created a sense that the necessary know-how wasn’t too far off.

The next technological leap came in 2008, with the cloning of a dead mouse that had been frozen at –20℃ for 16 years. If frozen individuals could be cloned, re-animation of a whole species seemed possible.

After this achievement, de-extinction began to look like a potential way to tackle the modern global extinction crisis.

Read the rest of this entry »

Comments : 2 Comments »
Tags: Australia, biodiversity, climate change, conservation, de-extinction, ecology, environment, extinction, gene editing, Genetics, science, Thylacine
Categories : Australia, biodiversity, captive breeding, climate change, cloning, conservation, conservation biology, demography, disease, DNA, ecosystem function, ethics, evolution, extinction, genetic diversity, genetics, harvest, human-wildlife conflict, inbreeding depression, invasive species, living dead, minimum viable population, predator, recovery, research, threatened species

Cartoon guide to biodiversity loss LXX

16 02 2022

Here is the first set of biodiversity cartoons for 2022. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.

Read the rest of this entry »

Comments : Leave a Comment »
Tags: apathy, biodiversity, cartoon, climate change, environment, environmental apathy, extinction, fossil fuels, Global warming, indifference, meat, oil & gas, warning
Categories : biodiversity, carbon, cartoon, climate change, development, economics, environmental policy, exploitation, extinction, extinction debt, living dead

Unlikely the biodiversity crisis will improve any time soon

6 02 2020

hopeless Around a fortnight ago I wrote a hastily penned post about the precarious state of biodiversity — it turned out to be one of the most-read posts in ConservationBytes‘ history (nearly 22,000 views in less than two weeks).

Now, let’s examine whether this dreadful history is likely to get any better any time soon.

Even if extinction rates decline substantially over the next century, I argue that we are committed to an intensifying biodiversity extinction crisis. The aggregate footprint from the growing human population notwithstanding, we can expect decades, if not centuries, of continued extinctions from lag effects alone (extinction debts arising from previous environmental damage engendering extinctions in the future)¹.

Global vegetation cover and production are also likely to decline even in the absence of continued habitat clearing — the potential benefit of higher CO₂ concentrations for plant photosynthesis is more than offset by lower availability of water in the soil, heat stress, and the frequency of disturbances such as droughts². Higher frequencies and intensities of disturbance events like catastrophic bushfire will also exacerbate extinction rates³.

However, perhaps the least-appreciated element of potential extinctions arising from climate change is that they are vastly underestimated when only considering a species’ thermal tolerance⁴. In fact, climate disruption-driven extinction rates could be up to ten times higher than currently predicted⁴ when extinction cascades are taken into account⁵. Read the rest of this entry »

Comments : Leave a Comment »
Tags: Aichi Targets, Anthropocene, biodiversity, biowealth, CBD, conservation, conservation biology, Convention on Biological Diversity, decline, ecological footprint, extinction, habitat loss, harvest, human overpopulation, kelp, SDG, Sustainable Development Goals, threatened species
Categories : anthropocene, climate change, conservation, development, ecosystem, ecosystem services, environmental policy, extinction, extinction debt, living dead

What is a ‘mass extinction’ and are we in one now?

13 11 2019

(reproduced from The Conversation)

—

For more than 3.5 billion years, living organisms have thrived, multiplied and diversified to occupy every ecosystem on Earth. The flip side to this explosion of new species is that species extinctions have also always been part of the evolutionary life cycle.

But these two processes are not always in step. When the loss of species rapidly outpaces the formation of new species, this balance can be tipped enough to elicit what are known as “mass extinction” events.

A mass extinction is usually defined as a loss of about three quarters of all species in existence across the entire Earth over a “short” geological period of time. Given the vast amount of time since life first evolved on the planet, “short” is defined as anything less than 2.8 million years.

Since at least the Cambrian period that began around 540 million years ago when the diversity of life first exploded into a vast array of forms, only five extinction events have definitively met these mass-extinction criteria.

These so-called “Big Five” have become part of the scientific benchmark to determine whether human beings have today created the conditions for a sixth mass extinction.

Read the rest of this entry »

Comments : 3 Comments »
Tags: Anthropocene, extinction, mass extinction, mass extinction event, speciation
Categories : biodiversity, climate change, climate shift, conservation, conservation biology, decline, deforestation, development, ecology, evolution, extinction, extinction debt, extinction vortex, habitat loss, harvest, human overpopulation, invasive species, living dead, speciation, sustainability, synergies, threatened species

Biodiversity is everyone’s responsibility

13 07 2018

Workspace: Team Of Diverse Workers Put Hands Together I’m not sure if many South Australians are aware of this, but the Parliamentary Inquiry into Biodiversity by the Environment, Resources and Development Committee presented a report to the 53rd Parliament of South Australia in March 2017. I thought it worthwhile reproducing their executive summary here on CB.com (I’ve highlighted the text that I deem to be rather insightful and simultaneously damning from our own elected government representatives):

—

This report summarises the findings and recommendations of the South Australian Parliament’s Environment, Resources and Development Committee’s inquiry into biodiversity in South Australia. Specifically, the inquiry investigated the regulatory and policy framework to determine whether it appropriately supports terrestrial and marine ecological processes, biodiversity values and abates species extinction.

The Committee found that in spite of the efforts of the State and Federal governments, industry and private landholders in South Australia, the condition of biodiversity in the State continues to decline. Species extinctions have occurred in the past and a further “extinction debt” still exists. There is no reason to believe that this trend will improve without a change to the way we approach biodiversity conservation.

A key theme to emerge from the Inquiry is that biodiversity conservation needs to be everyone’s responsibility; State and Federal government, industry, the broader community, and private landholders.

This also means that biodiversity conservation needs to occur across both public and private land, with actions coordinated at a landscape scale.

Making biodiversity conservation everyone’s responsibility requires a range of measures, including legislative reform, improved management of threats and greater involvement of the community. The provision of greater resources would yield faster results.

This report has focused on several key themes that emerged from submissions to the Inquiry.

Regulating for better biodiversity – South Australia’s legislative framework

South Australia’s current legislative framework does not provide for optimum biodiversity outcomes.

Three key issues contribute to this –

an out-of-date suite of environmental legislation that lacks cohesion and consistency, particularly regarding enforcement and compliance provisions;

inadequate and incomplete processes for identifying and protecting at-risk elements that need special measures (e.g. for protection of specific threatened species and ecological communities); and

inadequate consideration of biodiversity conservation in legislation that regulates human activities. In particular, there is a lack of cohesion between the environmental legislative and policy framework and land use planning, assessment and approval.

Statutory fragmentation of biodiversity considerations – that is, consideration of different aspects of biodiversity under different pieces of legislation – results in lack of cohesion and consistency, duplication and inefficiency, and makes it difficult to implement a landscape approach or to identify strategic opportunities and risks.

Taken as a whole, current enforcement provisions do not provide for effective and proportionate compliance action. Enforcement and compliance provisions across the relevant legislation are uneven in their approach. For example, penalties appear to be disproportionate and not risk-based (although there are some exceptions). Modern enforcement tools such as compliance orders, civil remedies and alternative penalties (such as administrative penalties, payment of damages including exemplary damages, remediation orders etc) are not included in all relevant legislation. There is some duplication in offences and inconsistency in the types of sanctions and penalty ranges.

There is an urgent need to amend the legislative framework to support any attempt to improve biodiversity outcomes.

The best approach will be based on clear, shared responsibility for biodiversity outcomes, supported by individual accountability. However, such a change will require policy development and drive.

To ensure forward momentum and improvements in the short term while developing the policy settings to support such a step-change, a staged approach could be implemented. There are various ways this could be achieved.

The Committee suggests a 3-stage approach to reforming the legislative framework. The Committee recommends the creation of a Biodiversity Expert Panel that is responsible for advancing this 3-stage approach.

The first stage will involve amendments to improve operation and effectiveness of the regulatory regime within current policy settings, acknowledging that as a result of Stage 3, provisions may be altered or moved into different pieces of legislation. Amendments generally would be to the existing ‘environmental’ Acts, and primarily to the National Parks and Wildlife Act 1972 and Native Vegetation Act 1991. They would include many of the specific areas for amendment identified in EDO submissions (2011 & 2015) as well as in the SA Government submission, for example, beginning with amendments to improve current environmental legislation.

Stage 2 would progress to amendments to improve integration between Acts and improve support for landholders and community participation.

Stage 3 would implement a system whereby all resource use and management would be managed by one piece of legislation, with protection of biodiversity and sustainable development at its core. Provisions for protected area management, and for the scientific work involved in identifying threatened species and communities, may be contained in separate legislation.

Threats, ecological resilience and restoration

The State’s native biodiversity is facing myriad of current threats, including habitat loss and fragmentation (due to development and changing land-use), pest plants and animals, and control burn regimes. There is a need for more stringent vegetation protection, better informed and enacted control and management strategies of known pest plants and animals, and a revision of burning regimes.

Future threats to the State’s biodiversity will be largely driven by climate change impacts and the interaction with existing major threats (e.g. urbanisation and changing land use). Adequately preparing for and managing such future threats will require knowledge of projected changes and pro-active preparation for such changes.

Working with the community

Involvement of the community is an essential part of any biodiversity conservation strategy for the State. It is a foundation stone for moving to a point where biodiversity conservation is everyone’s business.

Community engagement will become increasingly important for biodiversity conservation, especially given the growing role of volunteers to support works on public land as well as the voluntary conservation efforts of private landholders. The expanding role of volunteers reenforces that biodiversity conservation is everyone’s business.

South Australia’s approach to biodiversity conversation on private land needs to be reinvigorated.

Cross cutting themes

There were several cross cutting themes identified in submissions to the Inquiry. There was broad recognition of the strong cultural and historic significance of elements of biodiversity to Aboriginal people, and that this is often poorly understood outside those communities. Continuing to identify ways for Aboriginal people to contribute to land and water management in South Australia remains a priority.

With respect to knowledge generation, critical knowledge gaps exist that need to be filled and existing knowledge is not being adequately understood, communicated or applied. From a resourcing perspective, there is concern that insufficient funds are being allocated to biodiversity conservation, which is affecting work on public and private lands.

The management of over-abundant species in South Australia remains a challenge, noting the recent impacts of long-nose fur seals in the Lower Lakes and Coorong, and ongoing concerns regarding the impact of animals such as little corellas and some species of kangaroos on negative vegetation.

Comments : 5 Comments »
Tags: biodiversity, climate change, ecological resilience, environmental legislation, management, South Australia, State of the Environment
Categories : anthropocene, Australia, biodiversity, cat, climate change, climate shift, conservation, deforestation, development, ecosystem, environmental policy, extinction, extinction debt, fragmentation, function, habitat loss, invasive species, living dead, management, monitoring, Murray-Darling, planning, prioritisation, protected area, recovery, reserve, restoration, South Australia, southern Australia, sustainability, threatened species, water

Why populations can’t be saved by a single breeding pair

3 04 2018

I published this last week on The Conversation, and now reproducing it here for CB.com readers.

—

Two days ago, the last male northern white rhino (Ceratotherium simum cottoni) died. His passing leaves two surviving members of his subspecies: both females who are unable to bear calves.

Even though it might not be quite the end of the northern white rhino because of the possibility of implanting frozen embryos in their southern cousins (C. simum simum), in practical terms, it nevertheless represents the end of a long decline for the subspecies. It also raises the question: how many individuals does a species need to persist?

Fiction writers have enthusiastically embraced this question, most often in the post-apocalypse genre. It’s a notion with a long past; the Adam and Eve myth is of course based on a single breeding pair populating the entire world, as is the case described in the Ragnarok, the final battle of the gods in Norse mythology.

This idea dovetails neatly with the image of Noah’s animals marching “two by two” into the Ark. But the science of “minimum viable populations” tells us a different story.

No inbreeding, please

The global gold standard used to assess the extinction risk of any species is the International Union for the Conservation of Nature (IUCN) Red List of Threatened Species. Read the rest of this entry »

Comments : 3 Comments »
Tags: Adam and Eve, apocalypse, de-extinction, extinction, inbreeding, inbreeding depression, Ragnarok, repopulating
Categories : Africa, Allee effect, cloning, conservation, conservation biology, decline, DNA, exploitation, extinction, extinction debt, extinction vortex, genetic diversity, genetics, inbreeding depression, living dead, minimum viable population, mvp, poaching, population dynamics, population viability analysis, PVA, recovery, threatened species

Transition from the Anthropocene to the Minicene

24 09 2016

Going, going … © CJA Bradshaw

I’ve just returned from a life-changing trip to South Africa, not just because it was my first time to the continent, but also because it has redefined my perspective on the megafauna extinctions of the late Quaternary. I was there primarily to attend the University of Pretoria’s Mammal Research Institute 50^thAnniversary Celebration conference.

As I reported in my last post, the poaching rates in one of the larger, best-funded national parks in southern Africa (the Kruger) are inconceivably high, such that for at least the two species of rhino there (black and white), their future persistence probability is dwindling with each passing week. African elephants are probably not far behind.

As one who has studied the megafauna extinctions in the Holarctic, Australia and South America over the last 50,000 years, the trip to Kruger was like stepping back into the Pleistocene. I’ve always dreamed of walking up to a grazing herd of mammoths, woolly rhinos or Diprotodon, but of course, that’s impossible. What is entirely possible though is driving up to a herd of 6-tonne elephants and watching them behave naturally. In the Kruger anyway, you become almost blasé about seeing yet another group of these impressive beasts as you try to get that rare glimpse of a leopard, wild dogs or sable antelope (missed the two former, but saw the latter). Read the rest of this entry »

Comments : 5 Comments »
Tags: Africa, Anthropocene, elephant, extinction, Holocene, megafauna, persistence, Pleistocene, poaching, rhino, rhinoceros
Categories : Africa, anthropocene, Australia, biodiversity, buffalo, bushmeat, conservation, ecology, ecosystem, ecosystem function, exploitation, extinction, fragmentation, habitat loss, living dead, mammal, management, palaeo-ecology, poaching, poverty, protected area, research, South America, threatened species, trophic cascades

Quantity, but not quality – slow recovery of disturbed tropical forests

8 11 2013

It is a sobering statistic that most of the world’s tropical forests are not ‘primary’ – that is, those that have not suffered some alteration or disturbance from humans (previously logged, cleared for agriculture, burned, etc.).

Today I highlight a really cool paper that confirms this, plus adds some juicy (and disturbing – pun intended – detail). The paper by Phil Martin and colleagues just published in Proceedings of the Royal Society B came to my attention through various channels – not least of which was their citation of one of our previous papers ;-), as well as a blog post by Phil himself. I was so impressed with it that I made my first Faculty of 1000 Prime recommendation¹ of the paper (which should appear shortly).

As we did in 2011 (to which Phil refers as our “soon-to-be-classic work” – thanks!), Martin and colleagues amassed a stunning number of papers investigating the species composition of disturbed and primary forests from around the tropics. Using meta-analysis, they matched disturbed and undisturbed sites, recording the following statistics: Read the rest of this entry »

Comments : 7 Comments »
Tags: biodiversity, biomass, carbon, carbon sequestration, Forest, Old-growth forest, primary forest, regrowth, restoration, tropical, tropics
Categories : agriculture, carbon, carbon trading, conservation, deforestation, ecosystem, extinction, extinction debt, fragmentation, habitat loss, harvest, living dead, logging, rain forests, recovery, reforestation, restoration, tropical

Too small to avoid catastrophic biodiversity meltdown

27 09 2013

Chiew Larn Reservoir is surrounded by Khlong Saeng Wildlife Sanctuary and Khao Sok National Park, which together make up part of the largest block of rainforest habitat in southern Thailand (> 3500 km²). Photo: Antony Lynam

One of the perennial and probably most controversial topics in conservation ecology is when is something “too small’. By ‘something’ I mean many things, including population abundance and patch size. We’ve certainly written about the former on many occasions (see here, here, here and here for our work on minimum viable population size), with the associated controversy it elicited.

Now I (sadly) report on the tragedy of the second issue – when is a habitat fragment too small to be of much good to biodiversity?

Published today in the journal Science, Luke Gibson (of No substitute for primary forest fame) and a group of us report disturbing results about the ecological meltdown that has occurred on islands created when the Chiew Larn Reservoir of southern Thailand was flooded nearly 30 years ago by a hydroelectric dam.

As is the case in many parts of the world (e.g., Three Gorges Dam, China), hydroelectric dams can cause major ecological problems merely by flooding vast areas. In the case of Charn Liew, co-author Tony Lynam of Wildlife Conservation Society passed along to me a bit of poignant and emotive history about the local struggle to prevent the disaster.

“As the waters behind the dam were rising in 1987, Seub Nakasathien, the Superintendent of the Khlong Saeng Wildlife Sanctuary, his staff and conservationist friends, mounted an operation to capture and release animals that were caught in the flood waters.

It turned out to be distressing experience for all involved as you can see from the clips here, with the rescuers having only nets and longtail boats, and many animals dying. Ultimately most of the larger mammals disappeared quickly from the islands, leaving just the smaller fauna.

Later Seub moved to Huai Kha Khaeng Wildlife Sanctuary and fought an unsuccessful battle with poachers and loggers, which ended in him taking his own life in despair in 1990. A sad story, and his friend, a famous folk singer called Aed Carabao, wrote a song about Seub, the music of which plays in the video. Read the rest of this entry »

Comments : 6 Comments »
Tags: alien species, biodiversity, environment, extinction, extinction lag, half life, invasive species, island biogeography, mammals, relaxation, SAR, species-area relationship, Thailand
Categories : alien species, Asia, biodiversity, biogeography, conservation, extinction, extinction debt, extinction vortex, flood, fragmentation, habitat loss, invasive species, island biogeography, living dead, mammal, minimum viable population, modelling, monitoring, South East Asia, species-area curve

Biogeography comes of age

22 08 2013

This week has been all about biogeography for me. While I wouldn’t call myself a ‘biogeographer’, I certainly do apply a lot of the discipline’s techniques.

This week I’m attending the 2013 Association of Ecology’s (INTECOL) and British Ecological Society’s joint Congress of Ecology in London, and I have purposefully sought out more of the biogeographical talks than pretty much anything else because the speakers were engaging and the topics fascinating. As it happens, even my own presentation had a strong biogeographical flavour this year.

Although the species-area relationship (SAR) is only one small aspect of biogeography, I’ve been slightly amazed that after more than 50 years since MacArthur & Wilson’s famous book, our discipline is still obsessed with SAR.

I’ve blogged about SAR issues before – what makes it so engaging and controversial is that SAR is the principal tool to estimate overall extinction rates, even though it is perhaps one of the bluntest tools in the ecological toolbox. I suppose its popularity stems from its superficial simplicity – as the area of an (classically oceanic) island increases, so too does the total number of species it can hold. The controversies surrounding such as basic relationship centre on describing the rate of that species richness increase with area – in other words, just how nonlinear the SAR itself is.

Even a cursory understanding of maths reveals the importance of estimating this curve correctly. As the area of an ‘island’ (habitat fragment) decreases due to human disturbance, estimating how many species end up going extinct as a result depends entirely on the shape of the SAR. Get the SAR wrong, and you can over- or under-estimate the extinction rate. This was the crux of the palaver over Fangliang He (not attending INTECOL) & Stephen Hubbell’s (attending INTECOL) paper in Nature in 2011.

The first real engagement of SAR happened with John Harte’s maximum entropy talk in the process macroecology session on Tuesday. What was notable to me was his adamant claim that the power-law form of SAR should never be used, despite its commonness in the literature. I took this with a grain of salt because I know all about how messy area-richness data can be, and why one needs to consider alternate models (see an example here). But then yesterday I listened to one of the greats of biogeography – Robert Whittaker – who said pretty much the complete opposite of Harte’s contention. Whittaker showed results from one of his papers last year that the power law was in fact the most commonly supported SAR among many datasets (granted, there was substantial variability in overall model performance). My conclusion remains firm – make sure you use multiple models for each individual dataset and try to infer the SAR from model-averaging. Read the rest of this entry »

Comments : 2 Comments »
Tags: Biogeography, British Ecological Society, ecology, extinction, fragmentation, INTECOL, invasive species, SAR, species-area relationship
Categories : alien species, biodiversity, biogeography, conservation, deforestation, extinction, extinction debt, fragmentation, habitat loss, INTECOL, invasive species, island biogeography, living dead, mathematics, metapopulation, minimum viable population, modelling, species-area curve

No substitute for primary forest

15 09 2011

A little over five years ago, a controversial and spectacularly erroneous paper appeared in the tropical ecology journal Biotropica, the flagship journal of the Association for Tropical Biology and Conservation. Now, I’m normally a fan of Biotropica (I have both published there several times and acted as a Subject Editor for several years), but we couldn’t let that paper’s conclusions go unchallenged.

That paper was ‘The future of tropical forest species‘ by Joseph Wright and Helene Muller-Landau, which essentially concluded that the severe deforestation and degradation of tropical forests was not as big a deal as nearly all the rest of the conservation biology community had concluded (remind you of climate change at all?), and that regenerating, degraded and secondary forests would suffice to preserve the enormity and majority of dependent tropical biodiversity.

What rubbish.

Our response, and those of many others (including from Toby Gardner and colleagues and William Laurance), were fast and furious, essentially destroying the argument so utterly that I think most people merely moved on. We know for a fact that tropical biodiversity is waning rapidly, and in many parts of the world, it is absolutely [insert expletive here]. However, the argument has reared its ugly head again and again over the intervening years, so it’s high time we bury this particular nonsense once and for all.

In fact, a few anecdotes are worthy of mention here. Navjot once told me one story about the time when both he and Wright were invited to the same symposium around the time of the initial dust-up in Biotropica. Being Navjot, he tore off strips from Wright in public for his outrageous and unsubstantiated claims – something to which Wright didn’t take too kindly. On the way home, the two shared the same flight, and apparently Wright refused to acknowledge Navjot’s existence and only glared looks that could kill (hang on – maybe that had something to do with Navjot’s recent and untimely death? Who knows?). Similar public stoushes have been chronicled between Wright and Bill Laurance.

Back to the story. I recall a particular coffee discussion at the National University of Singapore between Navjot Sodhi (may his legacy endure), Barry Brook and me some time later where we planned the idea of a large meta-analysis to compare degraded and ‘primary’ (not overly disturbed) forests. The ideas were fairly fuzzy back then, but Navjot didn’t drop the ball for a moment. He immediately went out and got Tien Ming Lee and his new PhD student, Luke Gibson, to start compiling the necessary studies. It was a thankless job that took several years.

However, the fruits of that labour have now just been published in Nature: ‘Primary forests are irreplaceable for sustaining tropical biodiversity‘, led by Luke and Tien Ming, along with Lian Pin Koh, Barry Brook, Toby Gardner, Jos Barlow, Carlos Peres, me, Bill Laurance, Tom Lovejoy and of course, Navjot Sodhi [side note: Navjot died during the review and didn’t survive to hear the good news that the paper was finally accepted].

Using data from 138 studies from Asia, South America and Africa comprising 2220 pair-wise comparisons of biodiversity ‘values’ between forests that had undergone some sort of disturbance (everything from selective logging through to regenerating pasture) and adjacent primary forests, we can now hammer the final nails into the coffin containing the putrid remains of Wright and Muller-Landau’s assertion – there is no substitute for primary forest. Read the rest of this entry »

Comments : 24 Comments »
Tags: biodiversity, biodiversity loss, conservation biology, deforestation, degraded forest, Forest, tropical forests, tropics
Categories : agriculture, Amazon, Asia, biodiversity, Borneo, Central America, conservation, deforestation, endemism, environmental policy, extinction, habitat loss, Indonesia, living dead, logging, Malaysia, mammal, oil palm, palm oil, prioritisation, protected area, rain forests, reforestation, reserve, restoration, Sarawak, South America, South East Asia, threatened species, tropical

The biodiversity extinction numbers game

4 01 2010

Not an easy task, measuring extinction. For the most part, we must use techniques to estimate extinction rates because, well, it’s just bloody difficult to observe when (and where) the last few individuals in a population finally kark it. Even Fagan & Holmes’ exhaustive search of extinction time series only came up with 12 populations – not really a lot to go on. It’s also nearly impossible to observe species going extinct if they haven’t even been identified yet (and yes, probably still the majority of the world’s species – mainly small, microscopic or subsurface species – have yet to be identified).

So conservation biologists do other things to get a handle on the rates, relying mainly on the species-area relationship (SAR), projecting from threatened species lists, modelling co-extinctions (if a ‘host’ species goes extinct, then its obligate symbiont must also) or projecting declining species distributions from climate envelope models.

But of course, these are all estimates and difficult to validate. Enter a nice little review article recently published online in Biodiversity and Conservation by Nigel Stork entitled Re-assessing current extinction rates which looks at the state of the art and how the predictions mesh with the empirical data. Suffice it to say, there is a mismatch.

Stork writes that the ‘average’ estimate of losing about 100 species per day has hardly any empirical support (not surprising); only about 1200 extinctions have been recorded in the last 400 years. So why is this the case?

As mentioned above, it’s difficult to observe true extinction because of the sampling issue (the rarer the individuals, the more difficult it is to find them). He does cite some other problems too – the ‘living dead‘ concept where species linger on for decades, perhaps longer, even though their essential habitat has been destroyed, forest regrowth buffering some species that would have otherwise been predicted to go extinct under SAR models, and differing extinction proneness among species (I’ve blogged on this before).

Of course, we could just all be just a pack of doomsday wankers vainly predicting the end of the world ;-)

Well, I think not – if anything, Stork concludes that it’s all probably worse than we currently predict because of extinction synergies (see previous post about this concept) and the mounting impact of rapid global climate change. If anything, the “100 species/day” estimate could look like a utopian ideal in a few hundred years. I do disagree with Stork on one issue though – he claims that deforestation isn’t probably as bad as we make it out. I’d say the opposite (see here, here & here) – we know so little of how tropical forests in particular function that I dare say we’ve only just started measuring the tip of the iceberg.

CJA Bradshaw

Stork, N. (2009). Re-assessing current extinction rates Biodiversity and Conservation DOI: 10.1007/s10531-009-9761-9

Comments : 2 Comments »
Tags: biodiversity, conservation, extinction, science
Categories : biodiversity, climate change, conservation, conservation biology, deforestation, ecosystem function, extinction, extinction debt, extinction vortex, living dead, Red List, species-area curve, threatened species, trophic cascades

Raise targets to prevent extinction

12 11 2009

I know I’ve blogged recently about this, but The Adelaidean did a nice little article that I thought I’d reproduce here. The source can be found here.

—

Comments : Leave a Comment »
Tags: biodiversity, conservation, minimum viable population, science
Categories : conservation, conservation biology, ecological triage, investment, living dead, management, minimum viable population, mvp, population viability analysis, PVA, Red List, threatened species

Managing for extinction

9 10 2009

ladder Ah, it doesn’t go away, does it? Or at least, we won’t let it.

That concept of ‘how many is enough?’ in conservation biology, the so-called ‘minimum viable population size‘, is enough to drive some conservation practitioners batty.

How many times have we heard the (para-) phrase: “It’s simply impractical to bring populations of critically endangered species up into the thousands”?

Well, my friends, if you’re not talking thousands, you’re wasting everyone’s time and money. You are essentially managing for extinction.

Our new paper out online in Biological Conservation entitled Pragmatic population viability targets in a rapidly changing world (Traill et al.) shows that populations of endangered species are unlikely to persist in the face of global climate change and habitat loss unless they number around 5000 mature individuals or more.

After several meta-analytic, time series-based and genetic estimates of the magic minimum number all agreeing, we can be fairly certain now that if a population is much less than several thousands (median = 5000), its likelihood of persisting in the long run in the face of normal random variation is pretty small.

We conclude essentially that many conservation biologists routinely underestimate or ignore the number of animals or plants required to prevent extinction. In fact, aims to maintain tens or hundreds of individuals, when thousands are actually needed, are simply wasting precious and finite conservation resources. Thus, if it is deemed unrealistic to attain such numbers, we essentially advise that in most cases conservation triage should be invoked and the species in question be abandoned for better prospects

A long-standing idea in species restoration programs is the so-called ‘50/500’ rule; this states that at least 50 adults are required to avoid the damaging effects of inbreeding, and 500 to avoid extinctions due to the inability to evolve to cope with environmental change. Our research suggests that the 50/500 rule is at least an order of magnitude too small to stave off extinction.

This does not necessarily imply that populations smaller than 5000 are doomed. But it does highlight the challenge that small populations face in adapting to a rapidly changing world.

We are battling to prevent a mass extinction event in the face of a growing human population and its associated impact on the planet, but the bar needs to be a lot higher. However, we shouldn’t necessarily give up on critically endangered species numbering a few hundred of individuals in the wild. Acceptance that more needs to be done if we are to stop ‘managing for extinction’ should force decision makers to be more explicit about what they are aiming for, and what they are willing to trade off, when allocating conservation funds.

CJA Bradshaw

(with thanks to Lochran Traill, Barry Brook and Dick Frankham)

Traill, L.W., Brook, B.W., Frankham, R.R., & Bradshaw, C.J.A. (2009). Pragmatic population viability targets in a rapidly changing world Biological Conservation DOI: 10.1016/j.biocon.2009.09.001

Comments : 8 Comments »
Tags: biodiversity, conservation, minimum viable population, science
Categories : conservation, conservation biology, decline, ecological triage, investment, living dead, management, minimum viable population, mvp, population viability analysis, PVA, Red List, threatened species

Classics: Fragmentation

3 10 2008

Figure 2 from Brook et al. (2008): Synergies among threatening processes relative to habitat loss and fragmentation. a) A large population within unmodified, contiguous habitat occupies all available niches so that long-term abundance fluctuates near full carrying capacity (K). b) When habitat is reduced (e.g., 50 % area loss), total abundance declines accordingly. c) However, this simple habitat-abundance relationship is complicated by the spatial configuration of habitat loss. In this example, all remaining fragmented subpopulations might fall below their minimum viable population (MVP) sizes even though total abundance is the same proportion of K as in panel B. As such, limited connectivity between subpopulations implies much greater extinction risk than that predicted for the same habitat loss in less fragmented landscapes. Further synergies (positive feedbacks among threatening processes; black arrows) might accompany high fragmentation, such as enhanced penetration of predators, invasive species or wildfire, micro-habitat edge effects, and reduced resistance to drought with climate change.

This is, perhaps, one of the most important concepts that the field of conservation biology has identified as a major driver of extinction. It may appear on the surface a rather simple notion that the more ‘habitat’ you remove, the fewer species (and individuals) there will be (see MacArthur & Wilson’s Classic contribution: The Theory of Island Biogeography), but it took us decades (yes, embarrassingly – decades) to work out that fragmentation is bad (very, very bad).

Habitat fragmentation occurs when a large expanse of a particular, broadly defined habitat ‘type’ is reduced to smaller patches that are isolated by surrounding, but different habitats. The surrounding habitat is typically defined a ‘matrix’, and in the case of forest fragmentation, generally means ‘degraded’ habitat (fewer native species, urban/rural/agricultural development, etc.).

Fragmentation is bad for many reasons: it (1) reduces patch area, (2) increases isolation among populations associated with fragments, and (3) creates ‘edges’ where unmodified habitat abuts matrix habitat. Each of these has dire implications for species, for we now know that (1) the smaller an area, the fewer individuals and species in can contain, (2) the more isolated a population, the less chance immigrants will ‘rescue’ it from catastrophes, and (3) edges allow the invasion of alien species, make the microclimate intolerable, increase access to bad humans and lead to cascading ecological events (e.g., fire penetration). Make no mistake, the more fragmented an environment, the worse will be the extinction rates of species therein.

What’s particularly sad about all this is that fragmentation was actually seen as a potentially GOOD thing by conservation biologists for many long years. The so-called SLOSS (Single Large or Several Small) debate pervaded the early days of conservation literature. The debate was basically the argument that several small reserves would provide more types of habitat juxtapositions and more different species complexes, making overall diversity (species richness) higher, than one large reserve. It was an interesting, if not deluded, intellectual debate because both sides presented some rather clever theoretical and empirical arguments. Part of the attraction of the ‘Several Small’ idea was that it was generally easier to find series of small habitat fragments to preserve than one giant no-go area.

However, we now know that the ‘Several Small’ idea is completely inferior because of the myriad synergistic effects of fragmentation. It actually took Bruce Wilcox and Dennis Murphy until 1985 to bring this to everyone’s attention in their classic paper The effects of fragmentation on extinction to show how silly the SLOSS debate really was. It wasn’t, however, until the mid- to late 1990s that people finally started to accept the idea that fragmentation really was one of the biggest conservation evils. Subsequent work (that I’ll showcase soon on ConservationBytes.com) finally put the nail in the SLOSS debate coffin, and indeed, we haven’t heard a whisper of it for over a decade.

For more general information, I invite you to read the third chapter in our book Tropical Conservation Biology entitled Broken homes: tropical biotas in fragmented landscapes, and our recent paper in Trends in Ecology and Evolution entitled Synergies among extinction drivers under global change.

CJA Bradshaw

Comments : 8 Comments »
Tags: biodiversity, conservation, science
Categories : conservation, deforestation, extinction debt, fragmentation, invasive species, island biogeography, living dead, protected area, reserve

Classics: The Living Dead

30 08 2008

‘Classics’ is a category of posts highlighting research that has made a real difference to biodiversity conservation. All posts in this category will be permanently displayed on the Classics page of ConservationBytes.com

—

Tilman, D., May, R.M., Lehman, C.L., Nowak, M.A. (1994) Habitat destruction and the extinction debt. Nature 371, 65-66

In my opinion, this is truly a conservation classic because it shatters optimistic notions that extinction is something only rarely the consequence of human activities (see relevant post here). The concept of ‘extinction debt‘ is pretty simple – as habitats become increasingly fragmented, long-lived species that are reproductively isolated from conspecifics may take generations to die off (e.g., large trees in forest fragments). This gives rise to a higher number of species than would be otherwise expected for the size of the fragment, and the false impression that many species can persist in habitat patches that are too small to sustain minimum viable populations.

These ‘living dead‘ or ‘zombie‘ species are therefore committed to extinction regardless of whether habitat loss is arrested or reversed. Only by assisted dispersal and/or reproduction can such species survive (an extremely rare event).

Why has this been important? Well, neglecting the extinction debt is one reason why some people have over-estimated the value of fragmented and secondary forests in guarding species against extinction (see relevant example here for the tropics and Brook et al. 2006). It basically means that biological communities are much less resilient to fragmentation than would otherwise be expected given data on species presence collected shortly after the main habitat degradation or destruction event. To appreciate fully the extent of expected extinctions may take generations (e.g., hundreds of years) to come to light, giving us yet another tool in the quest to minimise habitat loss and fragmentation.

CJA Bradshaw