Job: Research Associate in Eco-epidemiological modelling

3 03 2017

European rabbit infected with myxomatosis

Earlier this week I advertised two new PhD scholarships in palaeo-ecological modelling. Now we are pleased to advertise a six-month Research Associate position in eco-epidemiological modelling.

The position will be based in the School of Biological Sciences at Flinders University. Flinders University offers a dynamic research environment that explores the continuum of environmental and evolutionary research from the ancient to modern ecology. The School of Biological Sciences is an integrated community researching and teaching biology, and has a long history of science innovation.

Project background

Since 1996, Biosecurity South Australia has been running a capture-mark-recapture study on a European rabbit (Oryctolagus cuniculus) population located at Turretfield (~ 50 km north of Adelaide). Now into the 21st year, this is one of the world’s longest studies of its kind. Approximately every 8 weeks cage traps are reset and the population trapped over five days, with the captured rabbits weighed, sexed, tagged and blood-sampled. The study was established to investigate the epidemiology and efficacy of the two imported rabbit biocontrol agents, rabbit haemorrhagic disease virus (RHDV) and myxomatosis. To date, from 119 formal trapping events and RHDV-outbreak carcass-sampling trips, > 4500 rabbits have been monitored with > 8700 cELISA RHDV antibody tests and 7500 IgG, IgM and IgA RHDV antibody tests on sera (similarly for myxomatosis), and 111 RHDV-specific polymerase chain reaction (PCR) analyses run on tissue samples of the sampled rabbits. This represents an unparalleled dataset on rabbit survival, population fluctuations and disease dynamics. Read the rest of this entry »

The Evidence Strikes Back — What Works 2017

16 01 2017
Bat gantry on the A590, Cumbria, UK. Photo credit: Anna Berthinussen

Bat gantry on the A590, Cumbria, UK. Photo credit: Anna Berthinussen

Tired of living in a world where you’re constrained by inconvenient truths, irritating evidence and incommodious facts? 2016 must have been great for you. But in conservation, the fight against the ‘post-truth’ world is getting a little extra ammunition this year, as the Conservation Evidence project launches its updated book ‘What Works in Conservation 2017’.

Conservation Evidence, as many readers of this blog will know, is the brainchild of conservation heavyweight Professor Bill Sutherland, based at Cambridge University in the UK. Like all the best ideas, the Conservation Evidence project is at once staggeringly simple and breathtakingly ambitious — to list every conservation intervention ever cooked up around the world, and see how well, in the cold light of evidence, they actually worked. The project is ongoing, with new chapters of evidence added every year grouped by taxa, habitat or topic — all available for free on

What Works in Conservation’ is a book that summarises the key findings from the Conservation Evidence website, and presents them in a simple, clear format, with links to where more information can be found on each topic. Experts (some of us still listen to them, Michael) review the evidence and score every intervention for its effectiveness, the certainty of the evidence and any harmful side effects, placing each intervention into a colour coded category from ‘beneficial’ to ‘likely to be ineffective or harmful.’ The last ‘What Works’ book included chapters on birds, bats, amphibians, soil fertility, natural pest control, some aspects of freshwater invasives and farmland conservation in Europe; new for 2017 is a chapter on forests and more species added to freshwater invasives. Read the rest of this entry »

Battling the seven-headed hydra: Crassula control in Europe

8 11 2016
Hydra. Seba Albertus (1734-1765). Image from Wellsome Trust

Hydra. Seba Albertus (1734-1765). Image from Wellsome Trust

A contribution by Claire Wordley of Conservation Evidence.

The Australian swamp stonecrop (Crassula helmsii) is a small, unassuming looking plant with incredible resilience. It can survive both baking heat and freezing cold; it can live underwater, on the water’s surface and on land; it can survive being dried out, bleached and sprayed with hot foam; and it can regenerate from tiny fragments. Unfortunately, in the UK and elsewhere in Europe it is an invasive species, choking the oxygen from ponds and shading out other plants with knock-on effects for entire freshwater ecosystems.

Swamp stonecrop, also known as New Zealand pigmyweed, was first introduced to the UK from Tasmania in 1911 and sold in garden centres from 1927 as an ornamental pond oxygenator. Shockingly, despite being documented as an invasive plant in New Forest ponds as early as 1976, its sale in the UK was only banned in 2014. Crassula appears to be spread mostly by people, whether deliberately or accidentally; it appears to be concentrated around car parks, residential areas and areas where equipment such as fishing gear is likely to have come from an infected site. Nearly 20% of 700 UK waterbodies surveyed contained the weed. Since every 10% increase in Crassula corresponds to a 5% decrease in native vegetation, and negative effects of Crassula invasion have been documented for zooplankton, macro-invertebrates and fish, with possible negative impacts on amphibians as well, control and ideally eradication is clearly needed. But what works to destroy this superweed?

Killing the hydra

Crassula helmsii (photo by Benjamin Blondel)

Crassula helmsii (photo by Benjamin Blondel)

Like the seven-headed hydra of legend, Crassula helmsii seems able to regenerate after even harsh treatment and being shattered into tiny pieces. Documenting clearly what works to control this beast – and what does not – is critical. This work has recently been completed by Conservation Evidence at the University of Cambridge, as part of an ongoing series on controlling freshwater invasives. The team has worked to collect all the evidence on different ways of killing Crassula, and experts have scored these for their effectiveness (or otherwise).

One of the most effective ways to knock back Crassula appears to be applying herbicides, particularly glyphosate and diquat or diquat alginate. While each of these performed well to reduce Crassula in many trials – and the use of glyphosate and diquat together led to a 98% reduction in one trial – there are concerns that while the medicine could cure the disease, it could kill the patient. One study in the New Forest noted that native plant cover fell in the treatment sites at a greater rate than in the control sites, and glyphosate appears to be toxic to amphibians. There might also be adverse effects on some bird species, although this could be due more to habitat-level changes than direct toxicity, because other birds appeared to benefit from wetlands being sprayed with glyphosate. Read the rest of this entry »

Cartoon guide to biodiversity loss XXXIX

20 10 2016

Six more biodiversity cartoons coming to you all the way from Sweden (where I’ve been all week). See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.

Read the rest of this entry »

Massive yet grossly underestimated global costs of invasive insects

4 10 2016
Portrait of a red imported fire ant, Solenopsis invicta. This species arrived to the southeastern United States from South America in the 1930s. Specimen from Brackenridge Field Laboratory, Austin, Texas, USA. Public domain image by Alex Wild, produced by the University of Texas "Insects Unlocked" program.

Portrait of a red imported fire ant Solenopsis invicta. This species arrived to the southeastern USA from South America in the 1930s. Specimen from Brackenridge Field Laboratory, Austin, Texas, USA. Public domain image by Alex Wild, produced by the University of Texas “Insects Unlocked” program.

As many of you already know, I spent a good deal of time in France last year basking in the hospitality of Franck Courchamp and his vibrant Systematic Ecology & Evolution lab at Université Paris-Sud. Of course, I had a wonderful time and was sad to leave in the end, but now I have some hard evidence that I wasn’t just eating cheese and visiting castles. I was actually doing some pretty cool science too.

Financed by BNP-Paribas and Agence Nationale de Recherche, the project InvaCost was designed to look at the global impact of invasive insects, including projections of range dynamics under climate change and shifting trade patterns. The first of hopefully many papers is now out.

Just published in Nature Communications, I am proud that many months of hard work by a brilliant team of ecologists, epidemiologists and economists has culminated in this article entitled Massive yet grossly underestimated costs of invasive insects, which in my opinion is  the first robust analysis of its kind. Despite some previous attempts at estimating the global costs of invasive species1-4 (which have been largely exposed as guesswork and fantasy5-10), our paper rigorously treats the economic cost estimates and categorises them into ‘reproducible’ and ‘irreproducible’ categories.


Gypsy moth (Lymantria dispar) adult. Dimitri Geystor (France)

What we found was sobering. If we look at just ‘goods and services’ affected by invasive insects, the annual global costs run at about US$70 billion. These include agricultural, forestry and infrastructure damages, as well as many of the direct costs of clean-up and eradication, and the indirect costs of prevention. When you examine that number a little more closely and only include the ‘reproducible’ studies, the total annual costs dip to about US$25 billion, meaning that almost 65% of the costs recorded are without any real empirical support. Scary, especially considering how much credence people put on previously published global ‘estimates’ (for example, see some citation statistics here).


Formosan subterranean termite Coptotermes formosanus by Scott Bauer, US Department of Agriculture, Agricultural Research Service

There’s a great example to illustrate this. If you take it at face value, the most expensive invasive insect in the world is the Formosan subterranean termite Coptotermes formosanus estimated at US$30.2 billion/yr globally. However, that irreproducible estimate is based on a single non-sourced value of US$2.2 billion per year for the USA, a personal communication supporting a ratio of 1:4 of control:repair costs in a single US city (New Orleans), and an unvalidated assumption that the US costs represent 50% of the global total.

Read the rest of this entry »

Help Hawaii’s hyper-threatened birds

6 01 2015
Puaiohi or small Kaua'i thrush. Photo by Lucas Behnke

Puaiohi or small Kaua’i thrush. Photo by Lucas Behnke

You wouldn’t want to be a bird in Hawaii. There are more avian species threatened with extinction there than anywhere else in the USA. After humans arrived, some 70+ species have become extinct, and 31 are listed as threatened with extinction. In addition, 43% of 157 species are not native; among land birds, 69% are introduced species.

My friend, Cali Crampton asked me to promote their new crowdfunding project to reduce the threat of feral rats on Hawaiian birds. Please help if you can.

The Kaua‘i Forest Bird Recovery Project, a collaborative project of the Hawaii Department of Land and Natural Resources, Division of Forestry and Wildlife, the University of Hawaii Pacific Cooperative Studies Unit, and Garden Island Research and Development, has announced the launch of a crowdfunding and outreach campaign to generate support for protecting the native birds of Kaua’i by controlling rats with humane, self-resetting rat traps.

The campaign, named “Birds, not Rats!” runs through to 31 January 2015, with goals of increasing awareness of the threats that rats pose to birds and native ecosystems, and raising at least $10,000 for rat control through many small, individual donations.

Hawai’i is at the epicentre of the current global extinction crisis. Of the original 130+ native Hawaiian bird species, many have been lost forever, and only 11 are not yet endangered. Today, Kaua’i is home to eight native forest bird species, three of which are federally listed as endangered: the puaiohi or small Kaua’i thrush, the akeke’e or Kaua’i akepa, and the akikiki or Kaua’i creeper. Populations of these birds have plummeted as much as 90% in the last five years; the akikiki and the puaiohi now number fewer than 500 individuals, and the akeke’e numbers fewer than 1000 individuals. The Kaua’i Forest Bird Recovery Project’s goal is to reverse these declines. Read the rest of this entry »

InvaCost – estimating the economic damage of invasive insects

7 11 2014

insectinvasionThis is a blosh (rehash of someone else’s blog post) of Franck Courchamp‘s posts on an exciting new initiative of which I am excited to be a part. Incidentally, Franck’s spending the week here in Adelaide.

Don’t forgot to vote for the project to receive 50 000 € public-communication grant!

Climate change will make winters milder and habitats climatically more suitable year-round for cold-blooded animals like insects, but there are many questions remaining regarding whether such insects will be able to invade other regions as the climate shifts. There are many nasty bugs out there.

For example, the Asian predatory wasp is an invasive hornet in Europe that butchers pollinating insects, especially bees, thereby affecting the production of many wild and cultivated plants. I hope that we all remember what Einstein said about pollinators:

If bees were to disappear, humans will disappear within a few years.

(we all should remember that because it’s one of the few things he said that most of us understood). The highly invasive red fire ant is feared for its impacts on biodiversity, agriculture and cattle breeding, and the thousands of anaphylactic shocks inflicted to people by painful stings every year (with hundreds of deaths). Between the USA and Australia, over US$10 billion is spent yearly on the control of this insect alone. Tiger mosquitoes are vectors of pathogens that cause dengue fever, chikungunya virus and of about 30 other viruses. We could go on.

Most of these nasty creatures are now unable to colonise northern regions of Europe or America, or southern regions of Australia, for example, because they cannot survive cold temperatures. But how will this change? Where, when and which species will invade with rising temperatures? What will be the costs in terms of species loss? In terms of agricultural or forestry loss? In terms of diseases to cattle, domestic animals and humans? What will be the death toll if insects that are vectors of malaria can establish in new, highly populated areas?

We’ve proposed to study these and others from a list of 20 of the worst invasive insect species worldwide, and we got selected (i.e., financed!) by the Fondation BNP Paribas. In addition, the Fondation BNP Paribas has selected five scientific programmes on climate change and will give 50,000 € (that’s US$62,000) to the one selected by the public, for a communication project on their scientific programme. This is why we need you to vote for our project: InvaCost. Read the rest of this entry »