Taxonomy in the clouds

4 07 2011

Another post (see previous here, here and here) by my aspiring science-communicator PhD student, Salvador Herrando-Pérez.

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Taxonomy uses rigorous rules of nomenclature to classify living beings, so every known species has a given ‘name’ and ‘surname’. The revision of certain taxonomic groups (particularly through genetic analyses) is favouring the proliferation of nominally new species, often propelled by virtue of their charisma and conservation status.

In secondary school, most of my classmates associated the subject ‘Biology’ with unpronounceable Latin taxonomic names, with which all known living beings are branded — ‘Canis lupus’ reads the identity card of humanity’s best friend. When the Swedish monk Carl Linnaeus proposed such binomial nomenclature, he could hardly imagine that, two hundred years later, his terminology would underpin national and transnational budgets for species conservation. Taxonomic nomenclature allows the classification of species into clusters of the same kind (e.g., diatoms, amanitas, polychaetes, skinks), and the calculation of an indispensable figure for conservation purposes: how many species are there at a given location, range, country, continent, or the entire planet?

Traditionally, taxonomists described species by examining their (external and internal) morphological features, the widest consensus being that two individuals of different species could not hybridise. However, a practical objection to that thinking was that if, for instance, an ocean separated two leopard populations, ethics should prevent us from bringing them in contact only to check if they produce fertile offspring, hence justifying a common-species status. Genetics currently provides a sort of ‘remote check’.

New species, new names

Over the last three decades, the boom of genetics and the global modernisation of environmental policies have fostered alternative criteria to differentiate species, populations, and even individuals. As a result, experts have created a colourful lexicon to label management or conservation units or new taxonomical categories such as that of a subspecies1, e.g., Canis lupus dingo for the wild Australian dog (dingo). These changes have shaken the foundations of taxonomy because several definitions of species (biological, phylogenetic, evolutionary) are forced to live under the umbrella of a common nomenclature. Read the rest of this entry »


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Categories : biodiversity, Borneo, conservation, dingo, ecosystem function, ecosystem services, environmental policy, extinction, genetics, Indonesia, IUCN, Red List, threatened species

2010 ISI Impact Factors out now (with some surprises)

29 06 2011

It’s been another year of citations and now the latest list of ISI Impact Factors (2010) has come out. Regardless of how much stock you put in these (see here for a damning review), you cannot ignore their influence on publishing trends and author journal choices.

As I’ve done for 2008 and 2009, I’ve taken the liberty of providing the new IFs for some prominent conservation and ecology journals, and a few other journals occasionally publishing conservation-related material.

One particular journal deserves special attention here. Many of you might know that I was Senior Editor with Conservation Letters from 2008-2010, and I (with other editorial staff) made some predictions about where the journal’s first impact factor might be on the scale (see also here). Well, I have to say the result exceeded my expectations (although Hugh Possingham was closer to the truth in the end – bugger!). So the journal’s first 2010 impact factor (for which I take a modicum of credit ;-) is a whopping… 4.694 (3rd among all ‘conservation’ journals). Well done to all and sundry who have edited and published in the journal. My best wishes to the team that has to deal with the inevitable rush of submissions this will likely bring!

So here are the rest of the 2010 Impact Factors with the 2009 values for comparison: Read the rest of this entry »


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Categories : conservation, impact, scientific publishing

Reforesting wealthy countries for the common good

29 06 2011

The Coalition of Financially Challenged Countries with Lots of Trees, known as ‘CoFCCLoT’, representing most of the world’s remaining tropical forests, is asking wealthy nations to share global responsibilities and reforest their land for the common good of stabilizing climate and protecting biodiversity.

“We are willing to play our part, but we require a level playing field in which we all commit to equal sacrifices,” a coalition spokeswoman says. “Returning forest cover in the G8 countries and the European Union back to historic coverage will benefit all of us in the long-term.”

Seventy-five per cent of Europe was once forested. Now it is 45 per cent. Some countries such as Ireland saw forest cover reduced to near zero. Most forest cover in the developed world is now often planted with stands of alien trees, turning them into deserts for biodiversity. Remaining natural forests are often highly fragmented and have few native species. Read the rest of this entry »


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Categories : Africa, agriculture, biosequestration, carbon, conservation, deforestation, ecosystem services, Europe, human overpopulation, oil palm, palm oil, protected area, reforestation

Time to cough up for Navjot

27 06 2011

© N. Kantonicolas

You’d have to have been living under a rock for the last two weeks not to know that our esteemed colleague, great mate and all-round poker-in-the-eyes-of-convention, Professor Navjot Sodhi, died tragically on 12 June 2011 of lymphoma. but just in case you were under a rock, you can read about it here.

In the weeks that have elapsed, several amazing things have happened – despite Navjot being a complete bastard (note: I use this term in the Australian parlance meaning ‘one who could hold his own, who could detect bullshit at 100 m, who was a wonderful mate, and an even more terrible enemy’ – in essence, the highest compliment and expression of platonic love a man can give to another), his army of students, colleagues, admirers and distant relatives have flown into action to make damn sure he is not forgotten.

First, the outpouring of grief and accolades in the blogosphere hit a pick the week following his death (see here, here and here for examples). There was even a Facebook tribute page established within days. It just so happened too that he died during the Association for Tropical Biology and Conservation‘s annual meeting in Arusha, Tanzania (and with whom Navjot was a council member). I have heard from the likes of Bill Laurance, Luke Gibson, Nigel Stork and others that the meeting ended up essentially being in honour of Navjot once everyone heard the dreadful news. Read the rest of this entry »


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Categories : conservation, conservation biology, science, tropical

The rarity paradox

22 06 2011

© C. Madden

My friend and colleague at the Centre National de Recherche Scientfique (CNRS), Laboratoire d’Ecologie Systématique & Evolution based at the Université Paris-Sud in France, Dr. Franck ‘Allee Effect‘ Courchamp, has asked me to help him out finding a suitable candidate for what sounds like a very cool job. If you’re in the market for a very interesting and highly relevant conservation post-doctoral fellowship, please read on.

And even if you’re not looking for a position, but are interested in the anthropogenic Allee effect, then by all means, please read on as well.

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This two-year fellowship is part of a grant focused on demonstrating the novel rarity paradox, either in new wildlife trade markets (i.e., exotic pets, traditional medicine, et cetera) or in newly exploited species (e.g., tibetan antilope, seahorses, et cetera). Read the rest of this entry »


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Categories : Allee effect, caviar, conservation, economics, exploitation, extinction

The few, the loud and the factually challenged

18 06 2011

© The Guardian

Here’s a little paraphrased response I received from a colleague who works for a particular agency concerned about the ridiculous politicking and misinformation associated with marine parks proposed for South Australia.

I’ve posted several times before why marine parks are a win for all involved, from the biodiversity it is meant to protect, to the fishers who benefit from the free, public-good resource that they assist in maintaining (see here, here and here). The evidence is clear world-wide: marine parks benefit pretty much everything and everyone.

However, just like the climate change denalists who use every psychological tactic in the book to try to convince people that climate change is a belief when in fact, it is a soundly evidenced phenomenon, there are those Luddites who think that any change in the marine setting fundamentally threatens their way of life.

Here’s what my colleague had to say about some recent ill-informed comments on this blog:

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I wondered when they would find your blog. In my experience, do not engage. A game of intimidation has started. Read the rest of this entry »


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Categories : Australia, climate change, conservation, fish, fisheries, marine, marine protected area, South Australia

Navjot Sodhi is gone, but not forgotten

13 06 2011

I woke up this morning to a battery of emails expressing condolences on the tragic passing of Navjot Sodhi. I have to say that his death is personally a huge blow, and professionally, a tragic loss to the fields of ecology and conservation biology. He was a good friend, and a bloke with whom I had some great times. He was someone I could trust.

Many of you will know that Navjot had been ill for the last few months. I was told that at first it was something unidentifiable, then it was suspected diabetes, then the shock – some sort of ‘blood cancer’. I found out today it was one of the worst and most aggressive kinds of lymphoma that shuffled dear Navjot off this mortal coil. And it acted fast.

As I reflect on this moment, I remember all the times I spent with Navjot. I first met him in 1992 in the most unlikely of places – Edmonton, Canada at the University of Alberta where I was doing my MSc, and he his post-doc with Sue Hannon. Many years later, Navjot confessed that he thought I was a complete knob when he first met me, and that’s something we’ve laughed about on many occasions thereafter. Read the rest of this entry »


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Categories : Canada, conservation, conservation biology, conservation scholars, deforestation, extinction, Malaysia, science, tropical

Know thy threat

9 06 2011

Here’s another great guest post by Megan Evans of UQ – her previous post on resolving the environmentalist’s paradox was a real hit, so I hope you enjoy this one too.

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The reasons for the decline of Australia’s unique biodiversity are many, and most are well known. Clearing of vegetation for urban and agricultural land uses, introduced species and changed fire patterns are regularly cited in State of the Environment reports, recovery plans and published studies as major threats to biodiversity. But, while these threats are widely acknowledged, little has been done to quantify them in terms of the proportion of species affected, or their spatial extent at a national, state or local scale. To understand why such information on threats may be useful, consider for instance how resources are allocated in public health care1.

Threat knowledge

Conditions such as cancer, heart disease and mental health are regarded as National Health Priority Areas in Australia, and have been given special attention when prioritising funds since the late 1980s. The burden of disease in these priority areas are quantified according to the incidence or prevalence of disease or condition, and its social and economic costs. Estimates of burden of disease and their geographic distribution (often according to local government areas) can assist in communicating broad trends in disease burden, but also in prioritising efforts to achieve the best outcomes for public health. An approach similar to that used in healthcare could help to identify priorities for biodiversity conservation – using information on the species which are impacted by key threats, the spatial distributions of species and threats, and the costs of implementing specific management actions to address these threats. Read the rest of this entry »


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Categories : alien species, Australia, biodiversity, conservation, deforestation, environmental policy, extinction, fire, fox, habitat loss, harvest, health, invasive species, planning, threatened species

World Environment Day and Australian forest regeneration

5 06 2011

© WWF

As I retweeted ABC Environment‘s sentiment for a Happy Environment Day, I added that we have little to be happy about.

However, I am happy about one thing – we’ve recently received a large ARC Linkage Grant to look at best-practice forest regeneration techniques. The Environment Institute just put out a post on it, so I’ll let Adriana’s words do the talking.

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Sunday, 5 June is World Environment Day, this year’s theme is ‘Forests: Nature At Your Service’. Read on to find out how researchers at The Environment Institute are looking at ways of restoring our forests.

World Environment Day (WED) is an annual event that is aimed at being the biggest and most widely celebrated global day for positive environmental action. World Environment Day celebrations began in 1972 and has grown to become the one of the main vehicles through which the UN stimulates worldwide awareness of the environment and encourages political attention and action. Read the rest of this entry »


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Categories : conservation, deforestation, environmental policy, reforestation, research, restoration

Demise of the Australian ERA journal rankings

3 06 2011

Earlier this week Australian Senator Kim Carr (Minister for Innovation, Industry, Science and Research) announced the removal of the somewhat controversial ERA rankings for scientific journals.

Early last year I posted about the Excellence in Research for Australia (ERA) journal rankings for ecology and conservation journals. To remind you, the ERA has ranked > 20,000 unique peer-reviewed journals, with each given a single quality rating – and they are careful to say that “A journal’s quality rating represents the overall quality of the journal. This is defined in terms of how it compares with other journals and should not be confused with its relevance or importance to a particular discipline.”.

Now, after much to-ing and fro-ing about what the four rankings actually mean (A*, A, B & C), Senator Carr has announced that he’s dumping them under the advice of the Australian Research Council. Read the rest of this entry »


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Categories : Australia, conservation, science, science communication, scientific publishing, scientific writing

Cartoon guide to biodiversity loss XII

30 05 2011

The latest six cartoons… (see full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here).

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Read the rest of this entry »


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Categories : biodiversity, cartoon, climate change, conservation, economics, environmental policy, logging

Infinite planet theory

24 05 2011

Rob Dietz over at the Centre for the Advancement of the Steady State Economy (CASSE) just e-mailed me and suggested I reproduce a recent post of theirs on ConservationBytes.com. Rob has produced a cracker – very funny, but ‘reality’ usually is. Many thanks, Rob, for a fine piece of writing.

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Few people have read the dense volumes published by the economist Milton Mountebank, but his work has affected you, me and every single person on the planet. Dr. Mountebank has revolutionized economic thought, and now he has been recognized for his singular efforts. Yesterday at a gala reception in Stockholm, Sweden, the chairman of Sveriges Riksbank, Peter Norborg, presented Dr. Mountebank with the Nobel Prize in Economics for his lifetime of work on infinite planet theory.

In his presentation of the award, Mr. Norborg stated, “Dr. Mountebank has demonstrated imagination and inventiveness beyond what the rational mind can comprehend.” Indeed, it is because of his theories that we all do what we do economically. Nations strive for continuous GDP growth and endless expansion of consumption thanks to infinite planet theory. Mr. Norborg went on to say, “All of our banks, including Sveriges Riksbank, owe him a huge debt. We finance economic expansion. Our actions and decisions would be morally suspect if we lived on a finite planet.”

In a light-hearted moment during the presentation, Mr. Norborg asserted that Dr. Mountebank had provided an even greater service to humanity by reducing stress on individuals. “Best of all,” he said, “is that we can extract, consume and digest resources guilt-free. Planetary constraints have been conquered. They have gone the way of the dodo, the Roman Empire and the world’s major fisheries.” Read the rest of this entry »


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Categories : anthropocene, conservation, economics, ecosystem services, environmental economics, environmental policy

Over-estimating extinction rates

19 05 2011

I meant to get this out yesterday, but was too hamstrung with other commitments. Now the media circus has beat me to the punch. Despite the lateness (in news-time) of my post, my familiarity with the analysis and the people involved gives me a unique insight, I believe.

So a couple of months ago, Fangliang He and I were talking about some new analysis he was working on where he was testing the assumption that back-casted species-area relationships (SAR) gave reasonable estimates of inferred extinction rates. Well, that paper has just been published in today’s issue of Nature  by Fangliang He and Stephen Hubbell entitled: Species–area relationships always overestimate extinction rates from habitat loss (see also the News & Views piece by Carsten Rahbek and Rob Colwell).

The paper has already stirred up something of a controversy before the ink has barely had time to dry. Predictably, noted conservation biologists like Stuart Pimm and Michael Rosenzweig have already jumped down Fangliang’s throat.

Extinction rates of modern biota in the current biodiversity crisis (Ehrlich & Pringle 2008) are wildly imprecise. Indeed, it has been proposed that extinction rates exceed the deep-time average background rate by 100- to 10000-fold (Lawton & May 2008; May et al. 1995; Pimm & Raven 2000), and no rigorously quantification of these rates globally has ever been accomplished (although there are several taxon- and region-specific estimates of localised extinction rates (Brook et al. 2003; Regan et al. 2001; Hambler et al. 2011; Shaw 2005).

Much of the information used to infer past extinction rate estimates is based on  the species-area relationship (e.g., Brook et al. 2003); this method estimates extinction rates by reversing the species-area accumulation curve, extrapolating backward to smaller areas to calculate expected species loss. The concept is relatively simple, even though the underlying mathematics might not be. Read the rest of this entry »


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Categories : biodiversity, conservation, conservation biology, deforestation, extinction, extinction debt, fragmentation, habitat loss, mathematics, modelling, species-area curve

The evil sextet

18 05 2011

This post doubles as a Conservation Classic and a new take on an old concept. It’s new in the sense that it updates what we believe is an advance on a major milestone in conservation biology, even though some of the add-on concepts themselves have been around for a while.

First, the classic.

The ‘evil quartet’, or ‘four horsemen of the ecological apocalypse’, was probably the first treatment of extinction dynamics as a biological discipline in its own right. Jarod Diamond (1984) took a sweeping historical and contemporary view of extinction, then simplified the problem to four principal mechanisms:

  1. overhunting (or overexploitation),
  2. introduced species,
  3. habitat destruction and
  4. chains of linked extinctions (trophic cascades, or co-extinctions).

Far from a mere review or list of unrelated mechanisms, Diamond’s evil quartet crystallized conservation biologists’ thinking about key mechanisms and, more importantly, directed attention towards those factors likely to drive extinctions in the future. The unique combination of prehistorical through to modern examples gave conservation biologists a holistic view of extinction dynamics and helped spawn many of the papers described hereafter. Read the rest of this entry »


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Categories : alien species, anthropocene, biodiversity, bushmeat, climate change, conservation, decline, deforestation, exploitation, extinction, habitat loss, harvest, invasive species, threatened species

生态学 = ‘Ecology’ in China

13 05 2011

I’m just heading home after a very inspiring workshop organised by Fangliang He at Sun Yat-sen University in Guangzhou, China (I’m writing this from the Qantas Club in the Hong Kong airport).

Before I proceed to regale you with the salient details of the ‘International Symposium for Biodiversity and Theoretical Ecology‘, I am compelled to state publicly that I offer my sincerest condolences to Fangliang and his family; unfortunately Fangliang’s brother passed away while we were at the workshop and so Fangliang wasn’t able to spend much time reaping the fruits of his organisational labour. If you know Fangliang, please send him a supporting email.

That sad note aside, I am delighted to say that the workshop was compelling, challenging and also rather fortuitous. I was one of many overseas invitees, and I must say that I was at times overwhelmed by the size of the brains they managed to pack into the auditorium. Many colleagues I didn’t know attended, and I hope that many will become collaborators. The international invitees were: Read the rest of this entry »


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Categories : alien species, biodiversity, biogeography, China, climate change, conference, demography, ecology, ecosystem function, extinction, invasive species, mathematics, modelling, neutral theory, niche model, population dynamics, speciation, tropical

Tropical forests cooking their biodiversity

5 05 2011

Another ‘hot’ essay by Bill Laurance recently published online by Yale Environment 360 (a publication of the Yale University School of Forestry & Environmental Studies). Bill asked me to relay it on ConservationBytes.com, so here it is in full:

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Much attention has been paid to how global warming is affecting the world’s polar regions and glaciers. But a leading authority on tropical forests [that would be Bill] warns that rising temperatures could have an equally profound impact on rainforests and are already taking a toll on some tropical species.

On Jan. 12, 2002, in the Australian state of New South Wales, biologist Justin Welbergen was observing a colony of flying foxes for his Ph.D. research. The temperatures that day on Australia’s subtropical, eastern coast reached record highs, soaring to 42.9 ° C (109 ° F) at the weather station closest to Welbergen’s study site — nearly 8 ° C higher than the average summer maximum temperature.

The flying foxes, or giant fruit bats, normally just doze in the treetops through the day, but on this afternoon they were fanning themselves, panting frantically, jostling for shady spots, and licking their wrists in a desperate effort to cool down. Suddenly, when the thermometer hit 42 ° C, the bats began falling from the trees. Most quickly died. Welbergen and his colleagues counted 1,453 flying foxes that died from the heat in one colony alone. The scorching heat that day killed at least 2,200 additional flying foxes in eight other colonies along a 250-kilometre stretch of coastline. All the deaths occurred in colonies where temperatures soared above 41.7 ° C. Read the rest of this entry »


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Categories : Australia, climate change, conservation, deforestation, ecosystem function, endemic, endemism, extinction, fragmentation, habitat loss, modelling, rain forests, tropical

Silence of the birds

2 05 2011

Yet another contribution from my PhD student, Salvador Herrando-Pérez (see his previous ConservationBytes.com posts on micro-evolution and pollination).

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In the 1960s, Rachel Carson preoccupied (to put it mildly) the political and economic powers of the United States with the publication of her book, Silent Spring, an overwhelming essay highlighting the environmental impacts caused by the pesticide industry. Half a century later, the metaphor of that book – a spring devoid of bird song – stands in force as farmland birds keep declining worldwide at the mercy of agricultural practices insensitive to the ecosystem services biodiversity procures. The problem has been best studied in Europe where non-government organisations, such as the British Trust for Ornithology or the Sociedad Española de Ornitología, have been monitoring bird populations for decades, and the European Union has sumptuously financed research and management actions.

Sparrows are the commonest among common birds. Worldwide we see them wherever humans live, travel and take leisure, from mountains and beaches to stadiums and underground trains. These feathery dwarfs snick even through security checks and sliding doors at airports and shopping malls, and it is no one’s surprise to be overflown by one of them carrying a chip from the leftovers of a nearby food court. However, the deterioration of their populations has sown alarm among European politicians, society, and the scientific community. Read the rest of this entry »


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Categories : agriculture, biodiversity, conservation, decline, ecosystem services, Europe, food, habitat loss, human overpopulation

Ecosystem services – the non-human perspective

29 04 2011

A picture is worth a large, generally unquantifiable number of words (in all languages):

Who says I’m a misanthropist?

Enjoy your weekend.

CJA Bradshaw


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Categories : ecosystem services

Classics: Effective population size ratio

27 04 2011

Here’s another concise Conservation Classic highlighted in our upcoming book chapter (see previous entries on this book). Today’s entry comes from a colleague of mine, Dick Frankham, who has literally written the book on conservation genetics. I’ve published with Dick a few times – absolutely lovely chap who really knows his field more than almost any other. It is a great pleasure to include one of his seminal works as a Conservation Classic.

This entry is highly related to our work on minimum viable population size, and the controversial SAFE index (more on that later).

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Although it had long been recognized that inbreeding and loss of genetic diversity were accentuated in small, isolated populations (Charlesworth & Charlesworth, 1987), genetic hazards were generally considered to be of less consequence to extinction risk than demographic and environmental stochasticity. Frankham (1995) helped overturn this viewpoint, using a meta-analysis to draw together comprehensive evidence on the ratio of genetically effective to actual population size (Ne:N). Read the rest of this entry »


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Categories : Allee effect, conservation, extinction, genetics, minimum viable population, mvp

Who’s your carbon daddy?

20 04 2011

The other day, Bill Laurance asked Barry Brook and me to comment on an opinion editorial he was doing up, so I feel fully justified in reproducing it here (and he asked me to ;-). It has just been published online in Australian Geographic.

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I hate to be the bearer of bad news, but here it is: China is now the biggest global emitter of carbon dioxide (CO2), the chief greenhouse gas – and Australia has helped it attain that dubious honour.

China now spews out about 6.5 billion tons of CO2 annually, whereas the USA emits 5.8 billion tons a year (based on data for 2008 compiled by the U.S. Department of Energy). Collectively, these two countries account for over 40 per cent of global CO2 emissions. Number three on the list is Russia, with 1.7 billion tons per year, followed closely by India.

Of course, China’s huge leap in emissions is largely down to its dramatic industrial and economic growth, in concert with the fact that it is the world’s most populous nation, with over 1.3 billion people. To help fuel its growth, China is now building nearly one new coal-fired power-generating plant per week. Read the rest of this entry »


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Categories : China, climate change, conservation

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