Influential conservation ecology papers of 2019

24 12 2019

Bradshaw-Waves breaking on rocks Macquarie Island
As I’ve done for the last six years, I am publishing a retrospective list of the ‘top’ 20 influential papers of 2019 as assessed by experts in F1000 Prime (in no particular order). See previous years’ lists here: 20182017, 20162015, 2014, and 2013.

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Did people or climate kill off the megafauna? Actually, it was both

10 12 2019

When freshwater dried up, so did many megafauna species.
Centre of Excellence for Australian Biodiversity and Heritage, Author provided

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Earth is now firmly in the grips of its sixth “mass extinction event”, and it’s mainly our fault. But the modern era is definitely not the first time humans have been implicated in the extinction of a wide range of species.

In fact, starting about 60,000 years ago, many of the world’s largest animals disappeared forever. These “megafauna” were first lost in Sahul, the supercontinent formed by Australia and New Guinea during periods of low sea level.

The causes of these extinctions have been debated for decades. Possible culprits include climate change, hunting or habitat modification by the ancestors of Aboriginal people, or a combination of the two.


Read more: What is a ‘mass extinction’ and are we in one now?


The main way to investigate this question is to build timelines of major events: when species went extinct, when people arrived, and when the climate changed. This approach relies on using dated fossils from extinct species to estimate when they went extinct, and archaeological evidence to determine when people arrived.


Read more: An incredible journey: the first people to arrive in Australia came in large numbers, and on purpose


Comparing these timelines allows us to deduce the likely windows of coexistence between megafauna and people.

We can also compare this window of coexistence to long-term models of climate variation, to see whether the extinctions coincided with or shortly followed abrupt climate shifts.

Data drought

One problem with this approach is the scarcity of reliable data due to the extreme rarity of a dead animal being fossilised, and the low probability of archaeological evidence being preserved in Australia’s harsh conditions. Read the rest of this entry »





Adult disguises

2 12 2019

Skilled ornithologists can tell the age of a bird by the look of its feathers. But many species are advancing the moult of their first adult plumage in response to global warming, and the youngsters look more similar to the adults now than two centuries ago.

R Graphics Output

The clothes don’t make the (wo)man, but how we dress sends out a lot of information about our tastes, emotional state, or financial situation. In nature, where species have evolved to exploit all kinds of physical and chemical cues, visual communication determines a wealth of feeding and reproductive strategies (1).

Birds are familiar to all of us by the beauty and variety of their plumages (see extreme examples commented by David Attenborough here, here and here), which bird fans use to tell juveniles from males, males from females and breeders from migrants. In evolutionary time, birds have gradually moved away from tree-bark browns and tree-leaf greens and, due to functional requirements, modern feathers only span about one third of the colours these animals can perceive (2). They obtain yellows, oranges, and reds from carotenoid-containing food, dark colours from melanin pigment of own synthesis, and the so-called structural colours depend on how light reflects on the barbs of the feathers (2).

Plumage, across its entire range of designs, is a factor crucial to the life history of our feathery friends and, consequently, to evaluate how and how much anthropogenic climate change is impacting them (3).

Plumage and temperature

We know that mammals and birds are modifying their fur and feathers to optimise camouflage against landscapes with more or less snow (4), but less-known are the implications of climate change for feather moulting. Read the rest of this entry »





Climate change and humans together pushed Australia’s biggest beasts to extinction

25 11 2019

people-megafaunaOver the last 60,000 years, many of the world’s largest species disappeared forever. Some of the largest that we generally call ‘megafauna’ were first lost in Sahul — the super-continent formed by the connection of Australia and New Guinea during periods of low sea level. The causes of these extinctions have been heavily debated for decades within the scientific community.

Three potential drivers of these extinctions have been suggested. The first is climate change that assumes an increase in arid conditions that eventually became lethal to megafauna. The second proposed mechanism is that the early ancestors of Aboriginal people who either hunted megafauna species to extinction, or modified ecosystems to put the largest species at a disadvantage. The third and most nuanced proposed driver of extinction is the combination of the first two.

The primary scientific tools we scientists use to determine which of these proposed causes of extinction have the most support are dated fossil records from the extinct species themselves, as well as archaeological evidence from early Aboriginal people. Traditionally, the main way we use these data is to construct a timeline of when the last fossil of a species was preserved, and compare this to evidence indicating when people arrived. We can also reconstruct climate patterns back tens of thousands of years using models similar to the ones used today to predict future climates. Based on the comparison of all of these different timelines, we conclude that abrupt climate changes in the past were influential if they occurred at or immediately before a recorded extinction event. On the other hand, if megafauna extinctions occur immediately after humans are thought to have arrived, we attribute more weight to human arrival as a driver.

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Cartoon guide to biodiversity loss LVII

6 11 2019

The sixth set of six biodiversity cartoons for 2019. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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The politics of environmental destruction

22 10 2019

C_SE 409521698 Paul Ehrlich Lecture Event - Eventbrite2

You’d think I’d get tired of this, wouldn’t you? Alas, the fight does wear me down, but I must persist.

My good friend and colleague, the legendary Professor Paul Ehrlich of Stanford University, as well as his equally legendary wife, Anne, will be joining us in Adelaide for a brief visit during their annual southern migration.

Apart from just catching up over a few good bottles of wine (oh, do those two enjoy fine wines!), we have the immense privilege of having Paul appear at two events while he’s in town.

I’m really only going to be talking about the second of the two events (the first is a Science Meets Parliament gig with me and many others at the South Australia Parliament on 12 November): a grand, public lecture and Q&A session held at Flinders University on Wednesday, 13 November.

Haven’t heard of Paul? Where have you been hiding? If by some miracle you haven’t, here’s a brief bio:

Paul Ehrlich is Bing Professor of Population Studies Emeritus, President of the Center for Conservation Biology, Department of Biology, Stanford University and Adjunct Professor, University of Technology, Sydney. He does research in population biology (includes ecology, evolutionary biology, behavior, and human ecology and cultural evolution). Ehrlich has carried out field, laboratory and theoretical research on a wide array of problems ranging from the dynamics and genetics of insect populations, studies of the ecological and evolutionary interactions of plants and herbivores, and the behavioral ecology of birds and reef fishes, to experimental studies of the effects of crowding on human beings and studies of cultural evolution, especially the evolution of norms. He is President of the Millennium Alliance for Humanity and the Biosphere and is author and coauthor of more than 1100 scientific papers and articles in the popular press and over 40 books. He is best known to his efforts to alert the public to the many intertwined drivers that are pushing humanity toward a collapse of civilization – especially overpopulation, overconsumption by the rich, and lack of economic, racial, and gender equity. Ehrlich is a Fellow of the American Academy of Arts and Sciences, the American Entomological Society and the Beijer Institute of Ecological Economics, and a member of the United States National Academy of Sciences and the American Philosophical Society.  He is a Foreign Member of the Royal Society, an Honorary Member of the British Ecological Society and an Honorary Fellow of the Royal Entomological Society.  Among his many other honours are the Royal Swedish Academy of Sciences, Crafoord Prize in Population Biology and the Conservation of Biological Diversity (an explicit replacement for the Nobel Prize); a MacArthur Prize Fellowship; the Volvo Environment Prize; UNEP Sasakawa Environment Prize; the Heinz Award for the Environment; the Tyler Prize for Environmental Achievement; the Heineken Prize for Environmental Sciences; the Blue Planet Prize;  the Eminent Ecologist award of the Ecological Society of America, the Margalef Prize in Ecology and Environmental Sciences, and the BBVA Frontiers of Knowledge Award in Ecology and Conservation Biology. Prof Ehrlich has appeared as a guest on more than 1000 TV and radio programs; he also was a correspondent for NBC News. He has given many hundreds of public lectures in the past 50 years.

I hope your jaw just dropped.

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The Great Dying

30 09 2019

Here’s a presentation I gave earlier in the year for the Flinders University BRAVE Research and Innovation series:

There is No Plan(et) B — What you can do about Earth’s extinction emergency

Earth is currently experiencing a mass extinction brought about by, … well, … us. Species are being lost at a rate similar to when the dinosaurs disappeared. But this time, it’s not due to a massive asteroid hitting the Earth; species are being removed from the planet now because of human consumption of natural resources. Is a societal collapse imminent, and do we need to prepare for a post-collapse society rather than attempt to avoid one? Or, can we limit the severity and onset of a collapse by introducing a few changes such as removing political donations, becoming vegetarians, or by reducing the number of children one has?

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Cartoon guide to biodiversity loss LVI

4 09 2019

The fifth set of six biodiversity cartoons for 2019. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Nothing like a good forest

31 07 2019

Our history and culture are intimately tied to the planet’s forests and the services they provide to all living beings. In modern times, forests also help combat the impacts of anthropogenic climate change, not only by acting as powerful sinks of the carbon excess resulting from our greenhouse-gas emissions, but also as thermal shields we and many other species can benefit from.

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Understory of the laurel forest in Garajonay National Park (La Gomera, Canary Islands) – also part of the World Network of Biosphere Reserves since 2012. The fog, combined with the cloud belt blowing from the Atlantic Ocean against the mountains (Garajonay is the highest peak at 1500 m), creates a mesic microclimate crucial for plant endemism. Forest canopies reinforce humidity and buffer temperature variation for many species. Photo: Paco Rodríguez.

If we were to choose a house to live, most would likely opt for one with water and electricity supply, noiseless nights, nearby leisure and shopping, and easy communication by public transport. Lacking only one of those aspects could be off-putting.

In truth, those who have the privilege of living in a stable household value it by the full set of available commodities. Similarly, the value of an ecosystem rests on its entire repertoire of ecological functions (1). And this is particularly so for forest ecosystems.

The ecological value of a forest relies on the collection of its native characteristics (2): how many autochthonous and mature trees it can host, how much photosynthesis it fuels, how many pollinisers it feeds, how much soil and water it creates and retains, and many more (3). Read the rest of this entry »





Cartoon guide to biodiversity loss LV

4 07 2019

The fourth set of six biodiversity cartoons for 2019. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Cartoon guide to biodiversity loss LIV

17 05 2019

The third set of six biodiversity cartoons for 2019. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Cartoon guide to biodiversity loss LIII

25 03 2019

The second set of six biodiversity cartoons for 2019. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Action, not just science

25 02 2019

raised fistsIt has taken me a long time to decide to do this, but with role models like Claire Wordley, Alejandro Frid, and James Hansen out there, I couldn’t really find any more excuses.

Yes, I’ve been a strong advocate for action on biodiversity, environment and climate-change issues for a long time, and I’ve even had a few political wins in that regard with my writing and representation. I’ve even called out more than once for universities to embrace divestment from fossil fuels (to my knowledge, even my own university still has not).

While I still think these avenues are important, my ongoing observation is that things are getting worse politically, not better. That means that the normal armchair advocacy embraced by even the most outspoken academics is probably not going to be enough to elicit real political change that we — no, the planet — desperately needs.

Extinction-Rebellion-South-Australia2It is for this reason that I’ve joined the Extinction Rebellion (South Australia Chapter), especially after my friend and colleague, Dr Claire Wordley of the University of Cambridge, joined the UK Rebellion and wrote about her experiences on this very blog. That, coupled with my ongoing and mounting concern for the future Earth my daughter will inherit, requires me to take to the streets. Read the rest of this entry »





Thirsty forests

1 02 2019

Climate change is one ingredient of a cocktail of factors driving the ongoing destruction of pristine forests on Earth. We here highlight the main physiological challenges trees must face to deal with increasing drought and heat.

Forests experiencing embolism after a hot drought. The upper-left pic shows Scots (Pinus sylvestris) and black (P. nigra) pines in Montaña de Salvador (Espuñola, Barcelona, Spain) during a hot Autumn in 2015 favouring a massive infestation by pine processionary caterpillars (Thaumetopoea pityocampa) and tree mortality the following year (Lluís Brotons/CSIC in InForest-CREAF-CTFC). To the right, an individual holm oak (Quercus ilex) bearing necrotic branches in Plasencia (Extremadura, Spain) during extreme climates from 2016 to 2017, impacting more than a third of the local oak forests (Alicia Forner/CSIC). The lower-left pic shows widespread die-off of trembling aspen (Populus tremuloides) from ‘Aspen Parkland’ (Saskatchewan, Canada) in 2004 following extreme climates in western North America from 2001 to 2002 (Mike Michaelian/Canadian Forest Service). To the right, several dead aspens near Mancos (Colorado, USA) where the same events hit forests up to one-century old (William Anderegg).

A common scene when we return from a long trip overseas is to find our indoor plants wilting if no one has watered them in our absence. But … what does a thirsty plant experience internally?

Like animals, plants have their own circulatory system and a kind of plant blood known as sap. Unlike the phloem (peripheral tissue underneath the bark of trunks and branches, and made up of arteries layered by live cells that transport sap laden with the products of photosynthesis, along with hormones and minerals — see videos here and here), the xylem is a network of conduits flanked by dead cells that transport water from the roots to the leaves through the core of the trunk of a tree (see animation here). They are like the pipes of a building within which small pressure differences make water move from a collective reservoir to every neighbours’ kitchen tap.

Water relations in tree physiology have been subject to a wealth of research in the last half a decade due to the ongoing die-off of trees in all continents in response to episodes of drought associated with temperature extremes, which are gradually becoming more frequent and lasting longer at a planetary scale (1). 

Embolised trees

During a hot drought, trees must cope with a sequence of two major physiological challenges (2, 3, 4). More heat and less internal water increase sap tension within the xylem and force trees to close their stomata (5). Stomata are small holes scattered over the green parts of a plant through which gas and water exchanges take place. Closing stomata means that a tree is able to reduce water losses by transpiration by two to three orders of magnitude. However, this happens at the expense of halting photosynthesis, because the main photosynthetic substrate, carbon dioxide (CO2), uses the same path as water vapour to enter and leave the tissues of a tree.

If drought and heat persist, sap tension reaches a threshold leading to cavitation or formation of air bubbles (6). Those bubbles block the conduits of the xylem such that a severe cavitation will ultimately cause overall hydraulic failure. Under those conditions, the sap does not flow, many parts of the tree dry out gradually, structural tissues loose turgor and functionality, and their cells end up dying. Thus, the aerial photographs showing a leafy blanket of forest canopies profusely coloured with greys and yellows are in fact capturing a Dantesque situation: trees in photosynthetic arrest suffering from embolism (the plant counterpart of a blood clot leading to brain, heart or pulmonary infarction), which affects the peripheral parts of the trees in the first place (forest dieback).

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Cartoon guide to biodiversity loss LII

2 01 2019

The first set of six biodiversity cartoons for 2019 to usher in the New Year. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Influential conservation ecology papers of 2018

17 12 2018

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For the last five years I’ve published a retrospective list of the ‘top’ 20 influential papers of the year as assessed by experts in F1000 Prime — so, I’m doing so again for 2018 (interesting side note: six of the twenty papers highlighted here for 2018 appear in Science magazine). See previous years’ posts here: 2017, 20162015, 2014, and 2013.

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With a Rebel Yell, Scientists Cry ‘No, no, more!’

29 11 2018

Adrenaline makes experiences hyper-real. Everything seems to move in slow motion, apart from my heart, which is so loud that I am sure people can hear it even over the traffic.

It’s 11:03 on a sunny November morning in central London. As the green man starts to shine, I walk into the middle of the road and sit down. On either side of me, people do the same. There can only be about 50 of us sitting on this pedestrian crossing, and I murmur ‘are we enough?’

‘Look behind you,’ says a new friend.

I turn. Blackfriar’s Bridge, usually covered in cars and buses, is filling with people. Citizens walking into the road and staying there, unfurling colourful flags with hourglass symbols on them. The police film us, standing close, but make no move to arrest anyone. Later, we discover that at least some of them encourage our disobedience.

Messages start coming in — 6,000 people are here, and we’ve blocked five bridges in central London with Extinction Rebellion, protesting for action to stop climate change and species extinctions. I’m a scientist participating in my first ever civil disobedience, and for me, this changes everything.

ER1

Left to right: protestors include kids, company directors, and extinct species.

What makes a Cambridge academic — and thousands of other people — decide that sitting in a road is their best chance of being heard? In short, nothing else has got us the emissions cuts we need. The declaration that global warming is real and that greenhouse-gas emissions need to be cut came in 1988, when I was a year old. Since then, scientists have continued to be honest brokers, monitoring greenhouse gases, running models, presenting the facts to governments and to the people. And emissions have continued to climb. The 2018 IPCC report that shocked many of us into action told us we have 12 years to almost halve emissions, or face conditions incompatible with civilisation. How did we end up here? Read the rest of this entry »





Global warming causes the worst kind of extinction domino effect

25 11 2018

Dominos_Rough1-500x303Just under two weeks ago, Giovanni Strona and I published a paper in Scientific Reports on measuring the co-extinction effect from climate change. What we found even made me — an acknowledged pessimist — stumble in shock and incredulity.

But a bit of back story is necessary before I launch into describing what we discovered.

Last year, some Oxbridge astrophysicists (David Sloan and colleagues) published a rather sensational paper in Scientific Reports claiming that life on Earth would likely survive in the face of cataclysmic astrophysical events, such as asteroid impacts, supernovae, or gamma-ray bursts. This rather extraordinary conclusion was based primarily on the remarkable physiological adaptations and tolerances to extreme conditions displayed by tardigrades— those gloriously cute, but tiny (most are around 0.5 mm long as adults) ‘water bears’ or ‘moss piglets’ — could you get any cuter names?

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Found almost everywhere and always (the first fossils of them date back to the early Cambrian over half a billion years ago), these wonderful little creatures are some of the toughest metazoans (multicellular animals) on the planet. Only a few types of extremophile bacteria are tougher.

So, boil, fry or freeze the Earth, and you’ll still have tardigrades around, concluded Sloan and colleagues.

When Giovanni first read this, and then passed the paper along to me for comment, our knee-jerk reaction as ecologists was a resounding ‘bullshit!’. Even neophyte ecologists know intuitively that because species are all interconnected in vast networks linked by trophic (who eats whom), competitive, and other ecological functions (known collectively as ‘multiplex networks’), they cannot be singled out using mere thermal tolerances to predict the probability of annihilation. Read the rest of this entry »





Cartoon guide to biodiversity loss LI

23 10 2018

The six set of six biodiversity cartoons for 2018. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


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Sex on the beach

2 10 2018
Female green turtles (Chelonia mydas) spawning (top) and diving (bottom) on Raine Island (Great Barrier Reef, Queensland, Australia) — photos courtesy of Ian Bell. This species is ‘Endangered’ globally since 1982, mainly from egg harvesting (poaching conflict in Mexico for olive ridley Lepidochelys olivacea featured by National Geographic’s video here), despite the success of conservation projects (39). Green turtles inhabit tropical and subtropical seas in all oceans. Adults can grow > 150 kg and live for up to ~ 75 years. Right after birth, juveniles venture into the open sea to recruit ultimately in coastal areas until sexual maturity. They then make their first reproductive migration, often over 1000s of km (see footage of a real dive of a camera-equipped green turtle), to reach their native sandy beaches where pregnant females will lay their eggs. Each female can deposit more than one hundred eggs in her nest, and in several clutches in the same season because they can store the sperm from multiple mating events.

When sex is determined by the thermal environment, males or females might predominate under sustained climatic conditions. A study about marine turtles from the Great Barrier Reef illustrates how feminisation of a population can be partitioned geographically when different reproductive colonies are exposed to contrasting temperatures.

Fortunately, most people in Western societies already perceive that we live in a complex blend of sexual identities, far beyond the kind of genitals we are born with. Those identities start to establish themselves in the embryo before the sixth week of pregnancy. In the commonest scenario, for a human foetus XY with one maternal chromosome (X) and one paternal (Y) chromosome, the activation of the Sry gen (unique to Y) will trigger the differentiation of testicles and, via hormonal pathways, the full set of male characteristics (1).

Absence of that gene in an XX embryo will normally lead to a woman. However, in just one of many exceptions to the rule, Sry-expression failure in XY individuals can result in sterile men or ambiguous genitals — along a full gradient of intermediate sexes and, potentially, gender identities. A 2015 Nature ‘News’ feature echoes two extraordinary cases: (i) a father of four children found to bear a womb during an hernia operation, and (ii) a pregnant mother found to host both XX and XY cells during a genetic test – with her clinical geneticist stating “… that’s the kind of science-fiction material for someone who just came in for an amniocentesis” (2). These real-life stories simply reflect that sex determination is a complex phenomenon.

Three ways of doing it

In nature, there are three main strategies of sex determination (3) — see scheme here: Read the rest of this entry »