Australia | ConservationBytes.com

Empty seas coming to a shore near you

12 07 2012

Last week I had the pleasure of entertaining some old friends and colleagues for a writing workshop in Adelaide (don’t worry – they all came from southern Australia locations, so no massive carbon footprints for overseas travel). I’m happy to report it was a productive (and epicurean) week, but that’s not really the point of today’s post.

One of those participants was long-time colleague, Dr. Rik Buckworth. Rik and I first met in Darwin back in the early 2000s when he was lead fisheries scientist for Northern Territory Fisheries; this collaboration and friendship blossomed into an ARC Linkage Project (with Dr. Mark Meekan of AIMS) on shark fisheries (see some of the scientific outputs from that here, here, here and here). Rik has since moved to CSIRO in Brisbane, but keeps a hand in NT fisheries’ affairs. Incidentally, Rik trained under one of the most well-known fisheries modellers in the world – Carl Walters – when he did his PhD at the University of British Columbia back in the early 1990s.

During our workshop, Rik pointed out a paper he had co-authored back in 2009 in Reviews in Fish Biology and Fisheries that had completely escaped my attention – it’s a frightening and apocalyptic view of the Australasian marine tropics that seems to confirm our predictions about northern Australia’s marine future. Just take a look at the following two figures from their paper (Elasmobranchs in southern Indonesian fisheries: the fisheries, the status of the stocks and management options): Read the rest of this entry »

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Tags: Australia, chondrichthyan, fishing, illegal, illegal fishing, illegal unreported unregulated, IUU, Java Sea, Northern Territory, over-consumption, over-fishing, protein mining, ray, shark
Categories : Australia, biodiversity, China, conservation, decline, exploitation, extinction, fish, fisheries, food, harvest, illegal fishing, Indonesia, IUU fishing, predator, shark, tropical

Ghost extinctions

5 07 2012

The Philippine bare-backed fruit bat (Dobsonia chapmani; body size = < 220 mm, < 150 g; IUCN status: ‘Critically Endangered A2cd’) is endemic to lowland rain forests [top habitat image] from Negros and Cebu islands. This species of flying fox had been missing from the 1970s and was declared extinct in 2002 (34). In May 2003, five specimens [one shown in the picture above] were trapped in night nets in the Calatong forest (Negros Island), a ~ 1,000-ha fragment of secondary rain forest and agricultural lands [bottom habitat image] (35). The species is reliant on fruit-bearing vegetation and caves for feeding and roosting, respectively. As with many other Philippine bats, it suffers from habitat degradation and hunting. The family Pteropodidae comprises > 150 species. Despite their Draculian look, they all feed on fruits and nectar, and act as important plant pollinators (36), as well as disease vectors such as Ebola virus (37). Flying foxes are distributed in the tropics and subtropics from the Eastern Mediterranean, through the Arabian Peninsula, Asia, Australia, and many islands of the Indian Ocean. Photos courtesy of Ely L. Alcala.

Jared Diamond (1) coined the expression ‘evil quartet’ for the four main human causes of species extinctions: habitat loss/fragmentation, overkill, introduced species and extinction chains [with climate change and extinction synergies (2), the updated expression would be ‘evil sextet”]. However, one third of ‘extinct’ mammal species has been ‘found’ again. Recent studies reveal that the probability of rediscovery depends on the cause of extinction.

Arriving in a city to search for an old friend, I would first look in the suburb where he lived, the pub where we enjoyed a drink and some music, or the park where we used to play football. But if my friend was an outlaw, or had recently gone through a traumatic experience, my chances of finding him at his favourite spots would shrink.

If, instead of a friend, we are searching for the last survivors of an extinct-declared species, surveys also tend to take place in the habitat in which the species was previously found. Such a strategy rests on the classical hypothesis that, given the spatial distribution of a species, its gradual decline must occur from the periphery to the core of its distribution (‘range collapse’) where, in theory, the habitat should be of better quality and the number of individuals higher (3). In contrast, recent work supports that the trajectory of demise of threatened vertebrates progresses from the core to the periphery (‘range eclipse’) (4), because many perturbations make their way as a progressive wave, e.g, fire, logging or urbanisation.

Diana Fisher (5) supports the ‘range eclipse’ hypothesis for ‘extinct’ mammals which have been rediscovered. She quantifies that 60% of the new records are made from peripheral habitats, mainly when the principal cause of extirpation is habitat loss. Not only that, on average species are rediscovered at altitudes 35 % higher than historical records, and only in 5 % of the cases at the locality where it had been last seen.

Read the rest of this entry »

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Tags: Australia, biodiversity, detection, extinction, Jared Diamond, range collapse, range eclipse, species, Thylacine
Categories : Australia, biodiversity, climate change, conservation, decline, extinction, habitat loss, species-area curve

Costs and benefits of a carbon economy for conservation

12 06 2012

I’ve had the good fortune of being involved now in a several endeavours funded by the Australian Centre for Ecological Analysis and Synthesis (ACEAS); two of those were workshops targeting specific questions regarding estimating modern extinction rates and examining the effects of genetic bottlenecks on Australian biota. The third was a bit different, to say the least – it was a little along the lines of ‘build it, and they will come‘. In other words, what happens when you bung 40 loosely associated researchers in a room for two days? Does anything of substance result, or does it degenerate into a mere talk-fest. I’m happy to say the former. The details of the ACEAS ‘Grand Workshop‘ are now being finalised in a paper that should be submitted by the end of the month. The ACEAS report is reproduced below.

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The Grand ACEAS Workshop was something of an experiment: what will happen when we bring 30 of Australia’s top scientists working on land management issues into the same room?

The Grand Workshop participants came from academia, research institutions and the government, and had all received ACEAS funding for working groups. David Keith, Ted Lefroy, Jasmyn Lynch, Wayne Meyer and Dick Williams were amongst the attendees of the two-day workshop.

And when this group of people came together wanting to analyse and synthesise ecological data, great things happened.

“We decided to focus on how carbon pricing legislation will affect land use change and how will that spill over into biodiversity persistence”, said Professor Corey Bradshaw, Director of Ecological Modelling at The University of Adelaide, who led the synthesis activity at the Grand ACEAS Workshop.

“Will carbon pricing lead to good outcomes for biodiversity, or negative ones, or will it have no bearing whatsoever?”

The workshop participants broke into five groups to discuss how the carbon tax legislation will change land use when it is introduced in July 2012, and the potential impact on biodiversity.

Some of the questions asked included:

Is it enough simply to allow plants to re-grow to be eligible for carbon credits?
How will an increase in forestry plantations impact biodiversity, water catchments and fire regimes?
Will there be more kangaroo grazing to reduce methane emissions and erosion, replacing hard-hoofed livestock?
Can you receive carbon credits for shooting large feral animals like goats, camels, deer and boars?

The groups found many opportunities for positive biodiversity outcomes with the carbon sequestration activities encouraged by carbon pricing, but there are also many potential ‘bio-perversities’. Read the rest of this entry »

Comments : 5 Comments »
Tags: Australia, biodiversity, Carbon pricing, Carbon tax, ecology, Emissions, Emissions Trading Scheme, environment
Categories : Australia, biodiversity, biosequestration, carbon, carbon trading, climate change, conservation, deforestation, environmental policy, fire, fragmentation, function, habitat loss, invasive species

It couldn’t have been us!

29 05 2012

A few months ago I asked Chris Johnson of the University of Tasmania to put together a post on his recent Science paper regarding Australian megafaunal extinctions. It seems that it stirred, yet again, some controversy among those who refuse to accept (mainly archaeologists) that humans could have had anything to do with pre-European extinctions. Indeed, how could humans possibly have anything to do with extinctions?!

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Like Corey, I am mainly interested in current environmental problems. But now and then I wade into the debate over the extinction of Australia’s Pleistocene megafauna [editor’s note: Chris literally wrote the book on Australian mammal extinctions over the last 50,000 years], those huge animals that wandered over the Australian landscape until about 40,000 years ago.

This is an endlessly fascinating topic. The creatures were wonderful and bizarre – it’s great fun doing work that lets you think about marsupial lions, giant kangaroos, geese bigger than emus, echidnas the size of wombats, and the rest. The cause of their extinction is perhaps the biggest mystery, and the most vexed controversy, in the environmental history of Australia. And for reasons that I will explain in a minute, solving this mystery is profoundly important for our understanding of contemporary Australian ecology.

The latest bit of work on this is a paper that a group of us (including Corey’s close colleague, Barry Brook) published in Science. You can see it here (if you don’t have access to Science, email me for a copy). So far, research on this problem has concentrated on dating fossils to find out when megafauna species went extinct. Several recent studies have found evidence for extinction between 40,000 and 50,000 years ago, which is about when people first came to Australia. But the conclusion that people caused a mass extinction of megafauna has been strenuously criticised, because so far it is based on only a few species with good collections of dates. The critics argue that other species disappeared before humans arrived, maybe in an extended series of extinctions caused by something else, like a deteriorating climate.

This argument over fossils will be with us for a long time. Because finding and dating fossils is such hard, slow work, the fossil record will inevitably give a seriously incomplete picture of what happened. One way around this problem would be to analyse the fossil record using mathematical approaches that take into account the problem of incomplete sampling. Corey is lead author of a recent paper that introduced a great new set of tools for this, and we are part of a group that is currently assembling a complete database of all recent dates on Australian fossils so that we can analyse them using these tools. Stay tuned for the result. Read the rest of this entry »

Comments : 5 Comments »
Tags: Aboriginal, Aborigine, Australia, Chris Johnson, extinction, megafauna, Sporormiella
Categories : Australia, bushmeat, climate change, conservation, decline, ecosystem function, exploitation, extinction, fire, harvest, invasive species, mammal

Ghosts of bottlenecks past

25 05 2012

I’ve just spent the last week at beautiful Linnaeus Estate on the northern NSW coast for my third Australian Centre for Ecological Analysis and Synthesis (ACEAS) (see previous post about my last ACEAS workshop).

This workshop is a little different to my last one, and I’m merely a participant (not the organiser) this time. Our task was to examine the mounting evidence that many Australian species appear to show a rather shallow genetic pool from a (or several) major past bottlenecks.

What’s a ‘bottleneck’? In reference to the form after which it was named, a genetic bottleneck is the genetic diversity aftermath after a population declines to a small size and then later expands. The history of this reduction and subsequent expansion is written in the DNA, because inevitably gene ‘types’ are lost as most individuals shuffle off this mortal coil. In a way, it’s like losing a large population of people who all speak different languages – inevitably, you’d lose entire languages and the recovering population would grow out of a reduced ‘pool’ of languages, resulting in fewer overall surviving languages.

Our workshop focus started, as many scientific endeavours do, rather serendipitously. Several years ago, Jeremy Austin noticed that devils who had died out on the mainland several thousand years ago had a very low genetic diversity, as do modern-day devils surviving in Tasmania. He thought it was odd because they should have had more on the mainland given that was their principal distribution prior to Europeans arriving. He mentioned this in passing to Steve Donnellan one day and Steve announced that he had seem the same pattern in echidnas. Now, echidnas cover most of Australia’s surface, so that was equally odd. Then they decided to look at another widespread species – tiger snakes, emus, etc. – and found in many of them, the same patterns were there. Read the rest of this entry »

Comments : 1 Comment »
Tags: ACEAS, Alan Cooper, Ancient DNA, Australia, Australian Centre for Ecological Analysis and Synthesis, bottleneck, DNA, endangered, Genetic diversity, Genetics, Population bottleneck, threatened species
Categories : Allee effect, Australia, biodiversity, climate change, conservation, decline, genetic diversity, genetics, inbreeding depression, threatened species

Can Australia afford the dingo fence?

18 05 2012

I wrote this last night with Euan Ritchie of Deakin University in response to some pretty shoddy journalism that misrepresented my comments (and Euan’s work). Our article appeared first in The Conversation this morning (see original article).

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We feel we have to set the record straight after some of our (Bradshaw’s) comments were taken grossly out of context, or not considered at all (Ritchie’s). A bubbling kerfuffle in the media over the last week compels us to establish some facts about dingoes in Australia, and more importantly, about how we as a nation choose to manage them.

A small article in the News Ltd. Adelaide Advertiser appeared on 11 May in which one of us (Bradshaw) was quoted as advocating the removal of the dingo fence because it was not “cost effective” (sic). Despite nearly 20 minutes on the telephone explaining to the paper the complexities of feral animal management, the role of dingoes in suppressing feral predators, and the “costs” associated with biodiversity enhancement and feral control, there wasn’t a single mention of any of this background or justification.

Another News Ltd. article denouncing Ritchie’s work on the role of predators in Australian ecosystems appeared in The Weekly Times the day before, to which Ritchie responded in full.

So it’s damage control, and mainly because we want to state categorically that our opinion is ours alone, and not that of our respective universities, schools, institutes or even Biosecurity SA (which some have claimed or insinuated, falsely, that we represent). Biosecurity SA is responsible for, inter alia, the dingo fence in South Australia. Although our opinions differ on its role, we are deeply impressed, grateful and supportive of their work in defending us from biological problems. Read the rest of this entry »

Comments : 15 Comments »
Tags: Australia, biodiversity, dingo, dingo fence, integrated pest management, Introduced species, invasive species, livestock, mesopredator release
Categories : Australia, biodiversity, cat, conservation, dingo, ecosystem function, ecosystem services, environmental policy, extinction, fox, function, harvest, invasive species, livestock, mammal, management, predator, southern Australia, threatened species, trophic cascades

No more ecology

9 05 2012

To all ecology people who read this blog (students, post-docs, academics), this is an intriguing, provocative and slightly worrying title. As ecology has matured into a full-fledged, hard-core, mathematical science on par with physics, chemistry and genetics (and is arguably today one of the most important sciences given how badly we’ve trashed our own home), its sophistication now threatens to render many of the traditional aspects of ecology redundant.

Let me explain.

As a person who cut his teeth in field ecology (with all the associated dirt, dangers, bites, stings, discomfort, thrills, headaches and disasters), I’ve had my fair share of fun and excitement collecting ecological data. There’s something quaintly Victorian (no, I am not referring to the state next door) about the romantic and obsessive naturalist collecting data to the exclusion of nearly all other aspects of civilised life; the intrepid adventurer in some of us takes over (likely influenced by the likes of David Attenborough) and we convince ourselves that our quest for the lonely datum will heal all of the Earth’s ailments.

Bollocks.

As I’ve matured in ecology and embraced its mathematical complexity and beauty, the recurring dilemma is that there are never enough data to answer the really big questions. We have sampled only a fraction of extant species, we know embarrassingly little about how ecosystems respond to disturbance, and we know next to nothing about the complexities of ecosystem services. And let’s not forget our infancy in understanding the synergies of extinctions in the past and projections into the future. Multiply this uncertainty by several orders of magnitude for ocean ecosystems.

Read the rest of this entry »

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Tags: biodiversity, coral reef, ecology, Great Barrier Reef, Hugh Possingham, photographic analysis, Species richness, surrogate
Categories : Australia, coasts, conservation, coral reefs, fish, marine, marine protected area, modelling, tropical

We only have decades…

26 04 2012

… not centuries.

Here’s a little video production The Environment Institute put together that explains some of our lab‘s work and future directions.

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CJA Bradshaw

Comments : 2 Comments »
Tags: agriculture, Barry Brook, biodiversity, Corey Bradshaw, human population, nuclear energy, policy, science, The Environment Institute, The University of Adelaide
Categories : anthropocene, Australia, biodiversity, climate change, conservation, ecosystem, ecosystem services, environmental science, extinction, modelling

To corridor, or not to corridor: size is the question

24 04 2012

I’ve just read a really interesting post by David Pannell from the University of Western Australia discussing the benefits (or lack thereof) of wildlife ‘corridors’. I’d like to elaborate on a few key issues, and introduce the most important aspect that really hasn’t been mentioned.

Some of you might be aware that the Australian Commonwealth Government has just released its Draft National Wildlife Corridors Plan for public comment, but many of you might not really know what a ‘corridor’ constitutes.

Wildlife or biodiversity ‘corridors’ have been around for a long time, at least in terms of proposals. The idea is fairly simple to conceive, but very difficult to implement in practice.

At least for as long as I’ve been in the conservation biology biz, ‘corridors’ have been proffered as one really good way to make broad-scale landscape restoration plausible and effective for (mainly) forest-dwelling species which have copped the worst of deforestation trends around Australia and the world. The idea is that because of intense habitat fragmentation, isolated patches of primary (or at least, reasonably intact secondary) forest can be linked by planting some sort of long corridor of similar habitat between them. Then, all the little creatures can merrily make their way back and forth between the patches, thus rescuing each other from extinction via migration. Read the rest of this entry »

Comments : 9 Comments »
Tags: connectivity, conservation biology, extinction, Habitat, Wildlife corridor
Categories : Australia, biodiversity, connectivity, conservation, deforestation, environmental policy, extinction, fragmentation, habitat loss, island biogeography, metapopulation, minimum viable population, protected area, reforestation, reserve, restoration

Give way to the invader

25 01 2012

By weird coincidence, Salvador Herrando-Pérez (student blogger extra-ordinaire – see his previous posts on evolution, pollination, bird losses, taxonomic inflation, niche conservatism, historical biogeography, ecological traps and ocean giants) has produced a post this week expanding on the problem of roads. Also weirdly coincidental is that both Salva and I are in his home country of Spain this week.

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Australia’s > 800,000-km road network would go 60 times around the equator of our planet. Confined to the boundaries of any one country, roads are a conspicuous component of the landscape, and shape the dispersion, survival and reproduction of many plants and animals in urban and remote areas.

Those who drive (or are driven by) will be familiar with the image of a crushed kangaroo on the roadside (a hedgehog in Europe), or the sticky mosaic of insects smashed against the windscreen after a high-speed run. Mortality by collision is one of the many effects that roads can have on the demography of organisms – including humans. Those effects encompass

physical alteration of terrestrial and aquatic habitats,
chemical pollution leakage during road construction and maintenance, and from asphalt compounds during storms,
alteration of animal behaviour (e.g., change in home range, or in patterns of flight or vocalisation),
access to remote areas by hunters, fishermen and gatherers in general, and
intense habitat fragmentation^1-3.

However, some species get around those negative impacts by using the roads as pathways to new territories, thereby eluding barriers like seas, mountains, rivers, dense vegetation, or competition for vital resources with other species. Read the rest of this entry »

Comments : 2 Comments »
Tags: alien, Australia, biodiversity, Cane toad, invasive species, roads, Toad
Categories : alien species, Australia, conservation, demography, environmental engineering, environmental policy, evolution, fragmentation, invasive species, management, predator, temperate, tropical

Surgical conservation: gain requires some pain

21 12 2011

I apologise to CB readers for the unusually low frequency of posts this month. With the International Congress for Conservation Biology taking up a lot of my time earlier this month, and the standard palaver of xmas preparations (i.e., getting shit done before the end of the year), I’m afraid the blog has taken a back seat. Now officially ‘on leave’ (whatever that means for an academic), I have found a brief window during which I can put a few thoughts together.

For this post I must take you back to October 2011 when, if you were in Australia, you might have heard about the so-called ‘debacle‘ of the Macquarie Island rabbit/rate/mouse-eradication programme in which it was identified that a few thousand seabirds had become the collateral damage.

To recap, an intense poisoning programme was initiated on subantarctic Macquarie Island to eradicate these pests after years of massive environmental degradation had finally forced the government’s (of Tasmania and the Commonwealth) hand to do something. What caught my eye in all this was the sheer stupidity and politicking associated with the programme, in which hyper-conservative Eric Abetz (Liberal Senator for Tasmania) managed to turn this amazing success into a Labor-bashing political sledge-hammer.

Abetz is no stranger to anti-environmentalism and fights vehemently for Tasmania’s forest-raping industry; he considers political parties such as the Greens, environmental groups such as The Wilderness Society and pro-democracy groups such as Get Up! his mortal enemies. He’s even had a go at esteemed author Richard Flanagan for supporting the anti-deforestation movement in Tasmania! Read the rest of this entry »

Comments : 3 Comments »
Tags: Eric Abetz, Macquarie Island, pest eradication, rabbit, Tasmania, triage
Categories : alien species, Australia, conservation, environmental policy, extinction, invasive species, management, research, science

Marine forests dropping off the edge

21 11 2011

This is probably a little late in terms of breaking news, but it’s good fodder for a blog post nonetheless.

I’ve done several posts now on the value (and threats) of marine macroalgae (seaweeds) – the last one hinted that a major paper was imminent regarding the fate of one of the world’s most important centres of macroalgae diversity in response to our rapidly changing climate: southern Australia.

Well, that paper has now come out in the eminent journal Current Biology headed by that crazy Aussie-Viking phycologist, Dr. Thomas Wernberg (byline here: Thomas was just awarded an Australian Research Council Future Fellowship and deserves many congratulations – not least for which the audacity to wear yellow budgie smugglers in public).

Entitled simply “Seaweed communities in retreat from ocean warming“, the short paper belies a hell of a lot of work examining over 60 years of herbarium records indicating MASSIVE shifts in the macroalgae community southwards on both the east and west coasts of Australia (see some media spots here). What do I mean by ‘massive’? Well, about 300 species on average (52 examined in most detail) shifted about 200 km south on the east coast (where warming has been most pronounced), and about 50 km south on the west coast. Read the rest of this entry »

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Tags: Australia, climate change, Global warming, Phycology, Seaweed, Thomas Wernberg
Categories : Australia, biodiversity, climate change, conservation, coral reefs, deforestation, extinction, kelp, marine, South Australia, southern Australia

Where are they? Finding (and conserving) the biggest fish in the sea

16 11 2011

A post from my PhD student, Ana Sequeira, on her latest paper just out in Diversity and Distributions: Ocean-scale prediction of whale shark distribution.

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The ocean is our major source of water, it stabilises our breathable atmosphere and provides many supplies such as medicines (e.g., anti-cancer therapy drugs¹) and food. Despite its the importance for human life, many marine species are now at a high risk of extinction owing to human changes to the oceans.

The whale shark (Rhincodon typus, Smith 1828) – an icon of the oceans of a spectacularly huge size and docile character – is just one of those species.

Despite being a fish that many people (mainly in Southeast Asia) are happy to have on their plate, whale sharks are worth millions of dollars every year in the ecotourism industry worldwide. One would then expect that being such a profitable species, their ecology would be well known and thoroughly studied.

The reality is quite different.

Basic information on whale sharks such as the whereabouts of their breeding areas, the average number of offspring per female, or even how many individuals still exist, is not currently known. Moreover, despite the genetic evidence that whale sharks worldwide are connected among different oceans, it is unclear if they move from places where they are protected to places where they are still illegally fished.

Information on distribution and patterns of occurrence in space and time is essential for conservation, and can help to save entire ecosystems if used correctly, for example: to isolate important mating and breeding areas.

To identify the whale shark’s seasonal distribution patterns in the Indian Ocean, to test if records follow a decreasing trend over time, and if occurrence is related to variation in climatic signals, we used multivariate distribution models of seasonal and inter-annual whale shark sightings opportunistically collected over 17 years by the tuna purse-seine fishery. Read the rest of this entry »

Comments : 2 Comments »
Tags: conservation, Fish, marine, ocean, Rhincodon typus, shark, Whale shark
Categories : Asia, Australia, conservation, fish, fisheries, harvest, illegal fishing, management, marine, protected area, shark, South East Asia, species distribution model, threatened species

Sustainable kangaroo harvests

10 11 2011

http://goo.gl/FNgcO

When I first started this blog back in 2008, I extolled the conservation virtues of eating kangaroos over cattle and sheep. Now I want to put my academic money where my mouth is, and do some kangaroo harvest research.

Thanks to the South Australia Department of Environment and Natural Resources (DENR) and the commercial kangaroo harvest industry, in conjunction with the University of Adelaide, I’m pleased to announce a new scholarship for a PhD candidate to work on a project entitled Optimal survey and harvest models for South Australian macropods based at the University of Adelaide’s School of Earth and Environmental Sciences.

DENR is custodian of a long-term macropod database derived from the State’s management of the commercial kangaroo harvest industry. The dataset entails aerial survey data for most of the State from 1978 to present, annual population estimates, quotas and harvests for three species: red kangaroo (Macropus rufus), western grey kangaroo (Macropus fuliginosus), and the euro (Macropus robustus erubescens). Read the rest of this entry »

Comments : 1 Comment »
Tags: Australia, Environmental science, harvest, Kangaroo, model, PhD, Red Kangaroo, University of Adelaide, Western Grey Kangaroo
Categories : Australia, climate change, conservation, harvest, kangaroo, mammal, population dynamics, population viability analysis, PVA, The University of Adelaide

Where the sick buffalo roam

28 10 2011

It’s been some time coming, but today I’m proud to announce a new paper of ours that has just come out in Journal of Applied Ecology. While not strictly a conservation paper, it does provide some novel tools for modelling populations of threatened species in ways not available before.

The Genesis

A few years ago, a few of us (Bob Lacy, Phil Miller and JP Pollak of Vortex fame, Barry Brook, and a few others) got together in a little room at the Brookfield Zoo in the suburban sprawl of Chicago to have a crack at some new modelling approaches the Vortex crew had recently designed. The original results were pleasing, so we had a follow-up meeting last year (thanks to a few generous Zoo benefactors) and added a few post-docs and students to the mix (Damien Fordham, Clive McMahon, Tom Prowse, Mike Watts, Michelle Verant). The great population modeller Resit Akçakaya also came along to assist and talk about linkages with RAMAS.

Out of that particular meeting a series of projects was spawned, and one of those has now been published online: Novel coupling of individual-based epidemiological and demographic models predicts realistic dynamics of tuberculosis in alien buffalo.

The Coupling

So what’s so novel about modelling disease in buffalo, and why would one care? Well, here’s the interesting part. The buffalo-tuberculosis example was a great way to examine just how well a new suite of models – and their command-centre module – predicted disease dynamics in a wild population. The individual-based population modelling software Vortex has been around for some time, and is now particularly powerful for predicting the extinction risk of small populations; the newest addition to the Vortex family, called Outbreak, is also an individual-based epidemiological model that allows a population of individuals exposed to a pathogen to progress over time (e.g., from susceptible, exposed, infectious, recovered/dead). Read the rest of this entry »

Comments : 3 Comments »
Tags: disease, epidemiology, MetaModel Manager, modelling, Outbreak, software, Vortex
Categories : Australia, buffalo, conservation, ecology, harvest, invasive species, mammal, modelling, population dynamics, tropical

Follow the TREND

24 10 2011

A little clichéd, I know, but that’s what it says on the T-shirt.

It’s been an interesting week. Not only did I return to some much-needed field work (even if it was diving in the muck of Adelaide’s Outer Harbour with 40-cm visability), but it was also the week when the TREND project became ‘official’ with the launching of its website and its public début at the Earth Station festival in Belair National Park over the weekend.

I can see the thought bubbles already – what the hell is ‘TREND‘ (apart from the obvious)?

Admittedly a somewhat contrived acronym, TREND stands for TRends in ENvironmental monitoring and Decision making – a multi-million dollar project financed mainly by the state government of South Australia and the Terrestrial Ecosystem Research Network (TERN – I know, another bloody acronym that is weirdly similar to TREND; oh how we Aussies love our acronyms and initialisms!). Here’s the official summary:

“TREND provides a system of data collection across native ecosystems, primary production regions and marine environments. By assessing the impacts of various potential climatic and environmental shifts, TREND will provide an early warning system for changes in South Australia’s diverse environments and a lasting legacy of long-term monitoring, informed policy and proactive response to environmental change. Read the rest of this entry »

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Tags: biodiversity, climate change, Gulf St Vincent, marine, South Australia, Spencer Gulf, transects, TREND
Categories : Australia, climate change, conservation, environmental science, marine, modelling, South Australia, The University of Adelaide

Little left to lose: deforestation history of Australia

6 10 2011

I don’t usually do this, but I’m going to blog about a paper I’ve just had accepted in the Journal of Plant Ecology that isn’t yet out online. The reason for the early post is that the paper itself won’t appear until 2012 in a special issue of the journal, and I think the information needs to get out there.

First, a little history – In May this year I blogged about a workshop that I attended at Sun Yat-Sen University in Guangzhou, China at the behest of Fangliang He. The workshop (International Symposium for Biodiversity and Theoretical Ecology) was attended by big-wig overseas ecologists and local talent, and was not only informative, but a lot of fun (apart from the slight headache on the way home from a little too much báijiǔ the night before). More importantly, we lǎo wài (老外) were paired with various students to assist with publications in progress, and I’m happy to say that for me, two of those have already produced fruit (one paper in review, another about to be submitted).

But the real reason for this post was the special issue of papers written by the invitees – I haven’t published in the journal before, and understand that it is a Chinese journal that has gone mainstream internationally now. I’m only happy to contribute to lifting its profile.

Given that I’m not a plant ecologist per se (although I’ve dabbled), I decided to write a review-like paper that I’ve been meaning to put together for some time now examining the state of Australia’s forests and the history of her deforestation and forest degradation. The reason I thought this was needed is that there is no single peer-reviewed resource one can turn to for a concise synopsis of the history of our country’s forest destruction. The stats are out there, but they’re buried in books, government reports and local-scale scientific papers. My hope is that my paper will be used as a general reference point for people wishing to get up to speed with Australia’s deforestation history.

The paper is entitled Little left to lose: deforestation and forest degradation in Australia since European colonisation, and it describes the general trends in forest loss and degradation Australia-wide, followed by state- and territory-level assessments. I’ve also included sections on plantations, biodiversity loss from deforestation and fragmentation, the feedback loop between climate change and deforestation, the history of forest protection legislation, and finally, a discussion of the necessary general policy directions needed for the country’s forests.

I’ve given a few titbits of the stats in a previous post, but let me just summarise some of the salient features here: Read the rest of this entry »

Comments : 30 Comments »
Tags: Australia, biodiversity, climate change, deforestation, Eucalypt, extinction, Forest, Forest degradation
Categories : Australia, climate change, conservation, deforestation, environmental policy, extinction, extinction debt, fragmentation, habitat loss, logging, rain forests, reforestation, reserve, South Australia, South East Asia, southern Australia

1 million hectares annually – the forest destruction of Indonesia

30 09 2011

Bill Laurance wrote a compelling and very dour piece in The Conversation this week. He asked for some ‘link love’, so I decided to reproduce the article here for ConservationBytes.com readers. Full credit to Bill and The Conversation, of course.

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What comes to mind when you think of Indonesia?

For biologists like myself, Australia’s northern neighbour provokes visions of ancient rainforests being razed by slash-and-burn farmers, and endangered tigers and orangutans fleeing from growling bulldozers.

This reality is true, but there is also hope on the horizon.

Indonesia is a vast, sprawling nation, spanning some 17,000 islands. Among these are Java, Sumatra, half of New Guinea and much of Borneo.

Some of the planet’s most biologically rich and most endangered real estate is found on this archipelago.

Today, Indonesia is losing around 1.1 million hectares of forest annually. That’s an area a third the size of Belgium, bigger than Australia’s Wet Tropics World Heritage Area.

With forest loss now slowing in Brazil, Indonesia has the dubious distinction of being the world’s deforestation “leader”. No nation is destroying its forests faster.

In Sumatra, where I visited recently, the world’s biggest paper-pulp corporations are chopping down hundreds of thousands of hectares of native rainforest to make paper and cardboard.

Some of these corporations also fund aggressive lobbyists, such as World Growth in Washington DC [CJA Bradshaw’s note: see our piece on one particular patron of WG – Alan Oxley], to combat their critics and dissuade major retail chains from dropping their products. Read the rest of this entry »

Comments : 3 Comments »
Tags: biodiversity loss, deforestation, Illegal logging, Indonesia
Categories : Australia, biodiversity, biosequestration, carbon, carbon trading, climate change, conservation, corruption, deforestation, environmental policy, extinction, fire, fragmentation, habitat loss, harvest, Indonesia, logging, Norway, rain forests, reserve, tropical

Rise of the phycologists

22 09 2011

I’ve had an interesting week. First, it’s been about 6 years since I was last in Japan, and I love coming here; the food is exquisite, the people are fantastic (polite, happy, accommodating), everything works (trains, buses, etc.) and most importantly, it has an almost incredible proportion of its native forests intact.

But it wasn’t for forests that I travelled to Japan (nor the sumo currently showing on the guest-room telly where I’m staying – love the sumo): I was here for a calcareous macroalgae workshop.

What?

First, what are ‘macroalgae’, and why are some ‘calcareous’? And why should anyone in their right mind care?

Good questions. Answers: 1. Seaweeds; 2. Many incorporate calcium carbonate into their structures as added structural support; 3. Read on.

Now, I’m no phycologist (seaweed scientist), but I’m fascinated by this particular taxon. I’ve written a few posts about their vital ecological roles (see here and here), but let me regale you with some other important facts about these amazing species.

There are about 12,000 known species of macroalgae described by phycologists, but as I’ve learnt this week, this is obviously a vast underestimate. For most taxa that people are investigating now using molecular techniques, the genetic diversity is so high and so geographically structured that there are obviously a huge number of ‘cryptic’ species within our current taxonomic divisions. This could mean that we’re out by up to a factor of 2 in the number of species in the world.

Another amazing fact – about 50 % of all known seaweed species are found in just two countries – Japan and Australia (hence the workshop between Japanese and Australian phycologists). Southern Australia in particular is an endemism hotspot.

Ok. Cool. So far so good. But so what? Read the rest of this entry »

Comments : 1 Comment »
Tags: biodiversity, climate change, coral reef, diversity, extinction, Japan, macroalgae, marine, Seaweed
Categories : acidification, Asia, Australia, biodiversity, carbon, China, climate change, conference, conservation, deforestation, ecosystem services, endemism, fish, fisheries, habitat loss, harvest, hotspot, marine, research, southern Australia, The University of Adelaide

Gagging scientists about marine parks

14 08 2011

Apologies to my readers for the lack of a post this past week – I’ve been attending the Ecological Society of America‘s 96^th Annual Meeting in an extremely hot (42 °C) Austin, Texas. As usual, I’ll provide a synopsis of the conference in a little bit, but I have some rather worrisome reports about the marine park process in Australia with which to regale you first.

My last post was the reproduction of a letter cosigned by over 150 marine scientists (mostly from Australia, including me) who are concerned that the a proposed network of marine reserves in the Commonwealth waters of the South West bioregional marine planning region is not based on sound scientific principles, and is instead a mash-up of what amounts to leftovers that industry hasn’t yet found a way to exploit. Not the best way to plan for marine biodiversity conservation in the long run.

After the post went live, I had a few interesting (and frightening) e-mail exchanges with a few colleagues who work for various Australian marine science institutions who complained that they were forbidden to cosign the letter. What? What? What? What? What? Read the rest of this entry »