Never let a good crisis go to waste

11 05 2020

pandemic

First published in the Millennium Alliance for Humanity and the Biosphere Blog on 5 May 2020.

by Professor Dan Blumstein (University of California at Los Angeles), Professor Paul Ehrlich (Stanford University), and Corey Bradshaw (Flinders University)

Winston Churchill’s words have never been more important than today as we experience the society- and life-changing consequences of the COVID-19 pandemic.

The extent and severity of the disease is a result of ignoring decades of warnings by scientists about the general deterioration of humanity’s epidemiological environment, and specific warnings about confining live, wild animals in markets. The situation was made even more lethal by ignoring the warnings from epidemiologists and disease ecologists once it became clear that an imminent pandemic most likely arose from this practice. Many countries, including the United States, are still ignoring those warnings and the required actions to lessen the impact.

Accordingly, we should ask ourselves, “what else are we missing?” What other huge problems are hiding in plain sight where science could guide policy to avoid catastrophic future failures? For instance, there are two principal health threats that must be addressed immediately, and we must strike while the iron is hot.

The overuse of antibiotics in agriculture will cause widespread deaths from formerly treatable bacterial diseases because of the evolution of antibiotic resistance in microbes. The evolution of resistance is well-known, predictable, and obvious — not in retrospect, but now. By feeding antibiotics to otherwise healthy livestock, animals can be housed in higher densities and they grow faster. Read the rest of this entry »





Shifting from prevention to damage control

5 05 2020

timeBack in March this year before much of the world morphed into the weirdness that now dictates all facets of life, I wrote an update for the Is This How You Feel project led by Joe Duggan.

It was an exercise in emotional expression not necessarily grounded in empiricism. But in that particular piece, I had written the following line:

Few scientists in my field are still seriously considering avoidance of environmental collapse; instead, the dominant discourse is centred on damage control.

But is this correct? Is this how most scientists in conservation feel today? In a way, this post serves both as a rationale for my expectation, and as a question for the wider community.

My rationale for that contention is that it is undeniable that biodiversity is going down the toilet faster than even some of the most pessimistic of us could have predicted. We are without doubt within the sixth mass extinction event every experienced on the Earth for at least the last 600 million years.

Yet, there have never been more conservation biologists and practitioners. There have never been more international treaties and accords that expressly aim to protect biodiversity.

To assert that we have failed is unhelpful fatalism, yet it cannot be ignored that biodiversity’s predicament and those charged with turning around its fate are not exactly replete with successes. Read the rest of this entry »





A fairer way to rank a researcher’s relative citation performance?

23 04 2020

runningI do a lot of grant assessments for various funding agencies, including two years on the Royal Society of New Zealand’s Marsden Fund Panel (Ecology, Evolution, and Behaviour), and currently as an Australian Research Council College Expert (not to mention assessing a heap of other grant applications).

Sometimes this means I have to read hundreds of proposals made up of even more researchers, all of whom I’m meant to assess for their scientific performance over a short period of time (sometimes only within a few weeks). It’s a hard job, and I doubt very much that there’s a completely fair way to rank a researcher’s ‘performance’ quickly and efficiently.

It’s for this reason that I’ve tried to find ways to rank people in the most objective way possible. This of course does not discount reading a person’s full CV and profile, and certainly taking into consideration career breaks, opportunities, and other extenuating circumstances. But I’ve tended to do a first pass based primarily on citation indices, and then adjust those according to the extenuating circumstances.

But the ‘first pass’ part of the equation has always bothered me. We know that different fields have different rates of citation accumulation, that citations accumulate with age (including the much heralded h-index), and that there are gender (and other) biases in citations that aren’t easily corrected.

I’ve generally relied on the ‘m-index’, which is simply one’s h-index divided by the number of years one has been publishing. While this acts as a sort of age correction, it’s still unsatisfactory, essentially because I’ve noticed that it tends to penalise early career researchers in particular. I’ve tried to account for this by comparing people roughly within the same phase of career, but it’s still a subjective exercise.

I’ve recently been playing with an alternative that I think might be a way forward. Bear with me here, for it takes a bit of explaining. Read the rest of this entry »





South Australia is still killing dingoes

14 04 2020

As we did for Victoria, here’s our submission to South Australia’s proposed changes to its ‘wild dog’ and dingo policy (organised again by the relentless and venerable Dr Kylie Cairns):

JE201608161745

© Jason Edwards Photography

14 April 2020

The Honourable Tim Whetstone MP, Minister for Primary Industries and Regional Development, South Australia

RE: PROPOSED CHANGES TO THE SA WILD DOG AND DINGO POLICY

Dear Minister,

The undersigned welcome the opportunity to comment on the proposed changes to the South Australian (SA) Government’s ‘Wild dog and Dingo’ declared animal policy under section 10 (1)(b) of the Natural Resources Management Act 2004. The proposed changes raise serious concerns for dingoes in SA because it:

1. Requires all landholders to follow minimum baiting standards, including organic producers or those not experiencing stock predation.

  • Requires dingoes within Ngarkat Conservation Park (Region 4) to be destroyed, with ground baiting to occur every 3 months.
  • Requires ground baiting on land irrespective of whether stock predation is occurring or not, or evidence of dingo (wild dog) presence.

2. Allows aerial baiting of dingoes (aka wild dogs) in all NRM regions – including within National Parks.

3. Uses inappropriate and misleading language to label dingoes as “wild dogs”

We strongly urge the PIRSA to reject the proposed amendments to the SA wild dog and dingo policy. Instead the PIRSA should seek consultation with scientific experts in ecology, biodiversity and wildlife-conflict to develop a policy which considers the important ecological and cultural identity of the dingo whilst seeking to minimise their impact on livestock using best-practice and evidence-based guidelines. Key to this aim, livestock producers should be assisted with the help of PIRSA to seek alternative stock protection methodology and avoid lethal control wherever possible. On the balance of scientific evidence, protection of dingoes should be enhanced rather than diminished. Widespread aerial baiting programs are not compatible with the continued persistence of genetically intact and distinct dingoes in SA.

In this context, we strongly emphasise the following points: Read the rest of this entry »





Cartoon guide to biodiversity loss LX

8 04 2020

The third set of biodiversity cartoons for 2020 (plus a video treat). See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


Read the rest of this entry »





Amphibian conservation in a managed world

1 04 2020
FrogBlog2

Crinia parinsignifera (top) and Limnodynastes tasmaniensis (bottom). Photo: Kate Mason

The amphibian class is diverse, and ranges from worm-like caecilians to tiny frogs that live their entire lives within bromeliads high in the rainforest canopy. Regardless of form or habit, all share the dubious honour of being cited as the world’s most endangered vertebrate taxon, and 41% of the species assessed are threatened with extinction. Rapidly changing climates will further exacerbate this situation as amphibians are expected to be more strongly affected than other vertebrates like birds or mammals.

This peril stems from a physiological dependence on freshwater.

Amphibians breathe (in part) through their skin, so they maintain moist skin surfaces. This sliminess means that most amphibians quickly dry out in dry conditions. Additionally, most amphibian eggs and larvae are fully aquatic. One of the greatest risks to populations are pools that dry too quickly for larval development, which leads to complete reproductive failure.

This need for freshwater all too often places them in direct competition with humans.

To keep pace with population growth, humans have engineered a landscape where the location, and persistence of water is tightly controlled. In seeking water availability for farming and amenity, we all too often remove essential habitats for amphibians and other freshwater fauna.

To protect amphibians from decline and extinction, land managers may need to apply innovative techniques to support vulnerable species. With amphibians’ strong dependence on freshwater, this support can be delivered by intelligently manipulating where and when freshwater appears in the landscape, with an eye to maintaining habitats for breeding, movement and refuge. A range of innovative approaches have been attempted to date, but they are typically developed in isolation and their existence is known only to a cloistered few. A collation of the approaches and their successes (and failures) has not occurred.

In our latest paper, we used a systematic review to classify water-manipulation techniques and to evaluate the support for these approaches. Read the rest of this entry »





A plant’s adaptive traits don’t follow climate conditions as you might expect

27 03 2020

mountain

Just a quick post today, my last one for March. Like probably most of you, I’ve been trying to pretend to be as normal as possible despite the COVID-19 surrealism all around me. But even COVID-19 has shifted my research to a small degree.

But I’m not going to talk about the global pandemic right now (I can almost hear the collective sigh of relief). Instead, I’m going to go back to topic and discuss a paper that I’ve just co-authored.

Last year I went to China’s Yunnan Province where I met some fantastic colleagues at the Xishuangbanna Tropical Botanical Garden who were doing some very cool stuff with the variation in plant functional traits across environmental gradients.

Well, those colleagues invited me to participate in one those research projects, and I’m happy to say that the result has just been published in Forests.

Measuring the functional traits of different alpine trees species in the Changbai Mountains of far north-eastern China (no, I didn’t get to go there), the research set out to test how these varied among species and elevation.

Of course, one expects that different trees use different combinations of traits to survive the rigours of mountain life (high variation in temperature, freezing, wind, etc.), but generally speaking, you might expect things like xylem vessel diameter and density to change more or less monotonically (i.e., changing in a consistent manner as elevation rises or falls). This is because trees should adapt their traits to the local conditions as best they can. Read the rest of this entry »





Projecting global deaths from covid19

18 03 2020

covid

I know that it’s not the best way to project expected deaths from a pandemic disease, but being something of a demographer, I just couldn’t help myself.

I therefore took the liberty of punching in some basic probabilities into our world population model to see how many people could potentially die from covid19. But this is not an epidemiological model, so I’m probably vastly over-estimating the total death rates.

Nonetheless, the results were revealing.

I first took the expected mortality by age class based on the Chinese data so far. I then assumed a worst-case scenario of a 60% infection rate (i.e., 3 out of 5 of us will eventually catch the virus). I assumed these values across the entire globe (not taking into account greater or lesser susceptibility or probability of death among countries or regions).

I also considered two more scenarios: (i) double the mortality rate (in each age class), and (ii) the disease outbreak lasting two years instead of just one.

The graph below shows the four different outcomes based on these scenarios relative to the baseline (no covid): Read the rest of this entry »





How I feel now about climate change

10 03 2020
bleak-2-david-vogler

‘Bleak No. 2’ by David Vogler

Five years ago I was asked by a researcher at the Australia National University, Joe Duggan, how I ‘felt’ about climate change.

This was part of an original initiative that put a human face on the scientists working on elements of one of society’s greatest existential threats.

Thus, Is This How You Feel? became a massive success in terms of bringing to the world the idea that scientists are also deeply affected by what they see happening around them.

Five years later, Joe asked me and all the other scientists who participated to provide an update on how we feel.

Here’s what I wrote: Read the rest of this entry »





In pursuit of an ecological resilience in the Anthropocene

3 03 2020

Changing TidesAn excerpt from Alejandro Frid‘s new book, Changing Tides: An Ecologist’s Journey to Make Peace with the Anthropocene (published first in Sierra, with photos courtesy of New Society Publishers)

The birth of my daughter, in 2004, thrust upon me a dual task: to be scientifically realistic about all the difficult changes that are here to stay, while staying humanly optimistic about the better things that we still have.

By the time my daughter turned eleven, I had jettisoned my nos­talgia for the Earth I was born into in the mid-196os—a planet that, of course, was an ecological shadow of Earth 100 years before, which in turn was an ecological shadow of an earlier Earth. The pragmatist in me had embraced the Anthropocene, in which humans dominate all biophysical processes, and I ended up feeling genuinely good about some of the possible futures in which my daughter’s generation might grow old.

It was a choice to engage in a tough situation. An acknowledgement of rapid and uninvited change. A reaffirmed commitment to everything I have learned, and continue to learn, as an ecologist working with Indigenous people on marine conservation. Fundamental to this perspective is the notion of resilience: the ability of someone or something—a culture, an ecosystem, an economy, a person—to absorb shocks yet still maintain their essence.

But what is essence? Read the rest of this entry »





Cartoon guide to biodiversity loss LIX

24 02 2020

The second set of six biodiversity cartoons for 2020. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


Read the rest of this entry »





Before you throw in the academic towel

17 02 2020

Throw-in-Towel-_-roboriginal-copy-e1491323619551A modified excerpt from The Effective Scientist:

Many academic scientists end up asking themselves at some point why they should even bother.

The rewards of a career in academic science are trifling, and at times downright insulting. Universities and many other research organisations are notoriously badly run, flipping uncomfortably and with frustrating frequency between incompetence and overbearing corporatisation. Even if they were once scientists themselves, your administrators and managers will fail catastrophically to provide you with clear guidance regarding their capricious expectations.

You will be underpaid. You will work too much. You will have to fight for every scrap of recognition and freedom.

The majority of the students you teach will never even thank you for your efforts. You will also spend your life begging for money to do your research, and in these days of tenuous employment security, you will most likely spend much of your time practically begging to renew your own salary.

If your chosen scientific discipline has even a modicum of direct application, you will nearly always be frustrated by the lack of engagement with and recognition by business, politics, and society in general. 

Not only will you be largely overlooked, you will more than likely be attacked by those who happen to disagree (ideologically) with your data. As a result, frustration and even depression are not uncommon states of being for many scientists who choose to engage (as they should) with the general public.

But I offer you this thought before you throw in the proverbial towel. Despite the bullshit of the daily grind, there is nothing quite as comforting as being aware that science is the only human endeavour that regularly attempts to reduce subjectivity. In the face of all posturing, manipulation, deceit, ulterior motives, and fanatical beliefs that go on every day around us, science remains the bedrock of society, and so despite most human beings being ignorant of its importance, or actively pursuing its demise, all human beings have benefitted from science. Read the rest of this entry »





Unlikely the biodiversity crisis will improve any time soon

6 02 2020

hopelessAround a fortnight ago I wrote a hastily penned post about the precarious state of biodiversity — it turned out to be one of the most-read posts in ConservationBytes‘ history (nearly 22,000 views in less than two weeks).

Now, let’s examine whether this dreadful history is likely to get any better any time soon.

Even if extinction rates decline substantially over the next century, I argue that we are committed to an intensifying biodiversity extinction crisis. The aggregate footprint from the growing human population notwithstanding, we can expect decades, if not centuries, of continued extinctions from lag effects alone (extinction debts arising from previous environmental damage engendering extinctions in the future)1.

Global vegetation cover and production are also likely to decline even in the absence of continued habitat clearing — the potential benefit of higher CO2 concentrations for plant photosynthesis is more than offset by lower availability of water in the soil, heat stress, and the frequency of disturbances such as droughts2. Higher frequencies and intensities of disturbance events like catastrophic bushfire will also exacerbate extinction rates3.

However, perhaps the least-appreciated element of potential extinctions arising from climate change is that they are vastly underestimated when only considering a species’ thermal tolerance4. In fact, climate disruption-driven extinction rates could be up to ten times higher than currently predicted4 when extinction cascades are taken into account5. Read the rest of this entry »





The state of global biodiversity — it’s worse than you probably think

24 01 2020

Chefurka biomass slide

I often find myself in a position explaining to non-professionals just how bad the state of global biodiversity really is. It turns out too that even quite a few ecologists seem to lack an appreciation of the sheer magnitude of damage we’ve done to the planet.

The loss of biodiversity that has occurred over the course of our species’ time on Earth is staggering. This loss is now truly planetary in scale and caused by human actions, albeit the severity of which is unequally distributed across the globe1. While Sandra Díaz and company recently summarised the the extent of the biodiversity crisis unfolding1 well in their recent synopsis of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES)2 report, I’m going to repeat some of the salient summary statements here, and add a few others. Read the rest of this entry »





Heat tolerance highly variable among populations and species

14 01 2020

Many ecological studies have examined the tolerance of terrestrial wildlife to high and low air temperatures over global scales (e.g., 1, 2, 3). This topic has been boosted in the last two decades by ongoing and predicted impacts of climate change on biodiversity (see summary of 2019 United Nation’s report here and here).

However, it is unfortunate that for most species, studies have measured thermal tolerance from a single location or population. Researchers interested in global patterns of thermal stress collect those measurements from the literature for hundreds to thousands of species [recently compiled in the GlobTherm database] (4), and are therefore often restricted to analysing one value of thermal tolerance per species.

CB_FunctionalEcology_jan2020_Photo

Three of the 15 species of Iberian lacertids sampled in our study of thermal tolerance (9), including the populations of Algerian psammodromus (Psammodromus algirus), Geniez’s wall lizard (Podarcis virescens) and Western green lizard (Lacerta bilineata) sampled in Navacerrada (Madrid), Fuertescusa (Cuenca) and Moncayo (Soria), respectively. Photos by S. Herrando-Pérez

Using this approach, ecologists have concluded that cold tolerance is far more variable than heat tolerance across species from the tropics to the boreal zone (5-8). Consequently, tolerance to heat stress might be a species trait with limited potential to change in response to global warming compared to cold tolerance (5). Read the rest of this entry »





Cartoon guide to biodiversity loss LVIII

4 01 2020

The first set of six biodiversity cartoons for 2020. This special, Australia-is-burning-down-themed set is dedicated to Scott Morrison and his ilk. See full stock of previous ‘Cartoon guide to biodiversity loss’ compendia here.


Read the rest of this entry »





Influential conservation ecology papers of 2019

24 12 2019

Bradshaw-Waves breaking on rocks Macquarie Island
As I’ve done for the last six years, I am publishing a retrospective list of the ‘top’ 20 influential papers of 2109 as assessed by experts in F1000 Prime (in no particular order). See previous years’ lists here: 20182017, 20162015, 2014, and 2013.

 

 

 

 

 

 

Read the rest of this entry »





Does high exposure on social and traditional media lead to more citations?

18 12 2019

social mediaOne of the things that I’ve often wondered about is whether making the effort to spread your scientific article’s message as far and wide as possible on social media actually brings you more citations.

While there’s more than enough justification to promote your work widely for non-academic purposes, there is some doubt as to whether the effort reaps academic awards as well.

Back in 2011 (the Pleistocene of social media in science), Gunther Eysenbach examined 286 articles in the obscure Journal of Medical Internet Research, finding that yes, highly cited papers did indeed have more tweets. But he concluded:

Social media activity either increases citations or reflects the underlying qualities of the article that also predict citations …

Subsequent work has established similar positive relationships between social-media exposure and citation rates (e.g., for 208739 PubMed articles> 10000 blog posts of articles published in > 20 journals), weak relationships (e.g., using 27856 PLoS One articlesbased on 1380143 articles from PubMed in 2013), or none at all (e.g., for 130 papers in International Journal of Public Health).

While the research available suggests that, on average, the more social-media exposure a paper gets, the more likely it is to be cited, the potential confounding problem raised by Eysenbach remains — are interesting papers that command a lot of social-media attention also those that would garner scientific interest anyway? In other words, are popular papers just popular in both realms, meaning that such papers are going to achieve high citation rates anyway?

Read the rest of this entry »





Did people or climate kill off the megafauna? Actually, it was both

10 12 2019

When freshwater dried up, so did many megafauna species.
Centre of Excellence for Australian Biodiversity and Heritage, Author provided

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Earth is now firmly in the grips of its sixth “mass extinction event”, and it’s mainly our fault. But the modern era is definitely not the first time humans have been implicated in the extinction of a wide range of species.

In fact, starting about 60,000 years ago, many of the world’s largest animals disappeared forever. These “megafauna” were first lost in Sahul, the supercontinent formed by Australia and New Guinea during periods of low sea level.

The causes of these extinctions have been debated for decades. Possible culprits include climate change, hunting or habitat modification by the ancestors of Aboriginal people, or a combination of the two.


Read more: What is a ‘mass extinction’ and are we in one now?


The main way to investigate this question is to build timelines of major events: when species went extinct, when people arrived, and when the climate changed. This approach relies on using dated fossils from extinct species to estimate when they went extinct, and archaeological evidence to determine when people arrived.


Read more: An incredible journey: the first people to arrive in Australia came in large numbers, and on purpose


Comparing these timelines allows us to deduce the likely windows of coexistence between megafauna and people.

We can also compare this window of coexistence to long-term models of climate variation, to see whether the extinctions coincided with or shortly followed abrupt climate shifts.

Data drought

One problem with this approach is the scarcity of reliable data due to the extreme rarity of a dead animal being fossilised, and the low probability of archaeological evidence being preserved in Australia’s harsh conditions. Read the rest of this entry »





Adult disguises

2 12 2019

Skilled ornithologists can tell the age of a bird by the look of its feathers. But many species are advancing the moult of their first adult plumage in response to global warming, and the youngsters look more similar to the adults now than two centuries ago.

R Graphics Output

The clothes don’t make the (wo)man, but how we dress sends out a lot of information about our tastes, emotional state, or financial situation. In nature, where species have evolved to exploit all kinds of physical and chemical cues, visual communication determines a wealth of feeding and reproductive strategies (1).

Birds are familiar to all of us by the beauty and variety of their plumages (see extreme examples commented by David Attenborough here, here and here), which bird fans use to tell juveniles from males, males from females and breeders from migrants. In evolutionary time, birds have gradually moved away from tree-bark browns and tree-leaf greens and, due to functional requirements, modern feathers only span about one third of the colours these animals can perceive (2). They obtain yellows, oranges, and reds from carotenoid-containing food, dark colours from melanin pigment of own synthesis, and the so-called structural colours depend on how light reflects on the barbs of the feathers (2).

Plumage, across its entire range of designs, is a factor crucial to the life history of our feathery friends and, consequently, to evaluate how and how much anthropogenic climate change is impacting them (3).

Plumage and temperature

We know that mammals and birds are modifying their fur and feathers to optimise camouflage against landscapes with more or less snow (4), but less-known are the implications of climate change for feather moulting. Read the rest of this entry »