extinction | ConservationBytes.com

Where do citizens stand on climate change?

2 01 2017

Talk to the hand

Climate change caused by industrialisation is modifying the structure and function of the Biosphere. As we uncork 2017, our team launches a monthly section on plant and animal responses to modern climate change in the Spanish magazine Quercus – with an English version in Conservation Bytes. The initiative is the outreach component of a research project on the expression and evolution of heat-shock proteins at the thermal limits of Iberian lizards (papers in progress), supported by the British Ecological Society and the Spanish Ministry of Economy, Industry and Competitiveness. The series will feature key papers (linking climate change and biodiversity) that have been published in the primary literature throughout the last decade. To set the scene, we start off putting the emphasis on how people perceive climate change.

Salvador Herrando-Pérez, David R. Vieites & Miguel B. Araújo

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“I would like to mention a cousin of mine, who is a Professor in Physics at the University of Seville – and asked about this matter [climate change], he stated: listen, I have gathered ten of the top scientists worldwide, and none has guaranteed what the weather will be like tomorrow in Seville, so how could anyone predict what is going to occur in the world 300 years ahead?”

Mariano Rajoy (Spanish President from 2011 to date) in a public speech on 22 October 2007

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Weather (studied by meteorology) behaves like a chaotic system, so a little variation in the atmosphere can trigger large meteorological changes in the short term that are hard to predict. On the contrary, climate (studied by climatology) is a measure of average conditions in the long term and thus far more predictable than weather. There is less uncertainty in a climate prediction for the next century than in a weather prediction for the next month. The incorrect statement made by the Spanish President reflects harsh misinformation and/or lack of environment-related knowledge among our politicians.

Climate has changed consistently from the onset of the Industrial Revolution. The IPCC’s latest report stablishes with 95 to 100% certainty (solid evidence and high consensus given published research) that greenhouse gases from human activities are the main drivers of global warming since the second half of the 20^th Century (1,2). The IPCC also flags that current concentrations of those gases have no parallel in the last 800,000 years, and that climate predictions for the 21^st Century vary mostly according to how we manage our greenhouse emissions (1,3). Read the rest of this entry »

Comments : 2 Comments »
Tags: Anthropocene, biodiversity, Climate, climate change, Global warming, ideology, perception bias, weather
Categories : bioclimatic envelope, biodiversity, climate change, climate shift, conservation, extinction

Genetic Management of Fragmented Animal and Plant Populations

10 12 2016

That is the title of a new textbook that will be available mid-2017.

After almost 6 years work, authors Dick Frankham, Jonathan Ballou, Katherine Ralls, Mark Eldridge, Michele Dudash, Charles Fenster, Bob Lacy & Paul Sunnucks have produced an advanced textbook/research monograph that aims to provoke a paradigm shift in the management of small, isolated population fragments of animals and plants.

One of the greatest unmet challenges in conservation biology is the genetic management of fragmented populations of threatened animal and plant species. More than a million small, isolated, population fragments of threatened species are likely suffering inbreeding depression, loss of evolutionary potential, and elevated extinction risks (genetic erosion). Re-establishing gene flow between populations is required to reverse these effects, but managers very rarely do this. On the contrary, molecular genetic methods are mainly being used to document genetic differentiation among populations, with most studies concluding that genetically differentiated populations should be managed separately (i.e., kept isolated), thereby dooming many populations to eventual extinction.

The need for a paradigm shift in genetic management of fragmented populations has been highlighted as a major issue in conservation. The rapidly advancing field of molecular genetics is continually providing new tools to measure the extent of population fragmentation and its genetic consequences. However, adequate guidance on how to use these data for effective conservation is still lacking, and many populations are going extinct principally for genetic reasons. Consequently, there is now urgent need for an authoritative textbook on the subject.

Read the rest of this entry »

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Tags: conservation genetics, evolutionary potential, fragmentation, genetic erosion, inbreeding depression, textbook
Categories : Allee effect, biodiversity, conservation, conservation biology, DNA, extinction, extinction debt, fragmentation, genetic diversity, genetics, threatened species

Potential conservation nightmare unfolding in South Africa

31 10 2016

Like most local tragedies, it seems to take some time before the news really grabs the overseas audience by the proverbial goolies. That said, I’m gobsmacked that the education tragedy unfolding in South Africa since late 2015 is only now starting to be appreciated by the rest of the academic world.

You might have seen the recent Nature post on the issue, and I do invite you to read that if all this comes as news to you. I suppose I had the ‘advantage’ of getting to know a little bit more about what is happening after talking to many South African academics in the Kruger in September. In a word, the situation is dire.

We’re probably witnessing a second Zimbabwe in action, with the near-complete meltdown of science capacity in South Africa as a now very real possibility. Whatever your take on the causes, justification, politics, racism, or other motivation underlying it all, the world’s conservation biologists should be very, very worried indeed.

Read the rest of this entry »

Comments : 4 Comments »
Tags: #feesmustfall, Africa, biodiversity, Education, megafauna, racism, science, South Africa, universities
Categories : Africa, anthropocene, biodiversity, biowealth, conservation, conservation biology, corruption, environmental policy, environmental science, extinction, governance, human overpopulation, management, poaching, poverty, propaganda, research, science

Transition from the Anthropocene to the Minicene

24 09 2016

Going, going … © CJA Bradshaw

I’ve just returned from a life-changing trip to South Africa, not just because it was my first time to the continent, but also because it has redefined my perspective on the megafauna extinctions of the late Quaternary. I was there primarily to attend the University of Pretoria’s Mammal Research Institute 50^thAnniversary Celebration conference.

As I reported in my last post, the poaching rates in one of the larger, best-funded national parks in southern Africa (the Kruger) are inconceivably high, such that for at least the two species of rhino there (black and white), their future persistence probability is dwindling with each passing week. African elephants are probably not far behind.

As one who has studied the megafauna extinctions in the Holarctic, Australia and South America over the last 50,000 years, the trip to Kruger was like stepping back into the Pleistocene. I’ve always dreamed of walking up to a grazing herd of mammoths, woolly rhinos or Diprotodon, but of course, that’s impossible. What is entirely possible though is driving up to a herd of 6-tonne elephants and watching them behave naturally. In the Kruger anyway, you become almost blasé about seeing yet another group of these impressive beasts as you try to get that rare glimpse of a leopard, wild dogs or sable antelope (missed the two former, but saw the latter). Read the rest of this entry »

Comments : 5 Comments »
Tags: Africa, Anthropocene, elephant, extinction, Holocene, megafauna, persistence, Pleistocene, poaching, rhino, rhinoceros
Categories : Africa, anthropocene, Australia, biodiversity, buffalo, bushmeat, conservation, ecology, ecosystem, ecosystem function, exploitation, extinction, fragmentation, habitat loss, living dead, mammal, management, palaeo-ecology, poaching, poverty, protected area, research, South America, threatened species, trophic cascades

Inexorable rise of human population pressures in Africa

31 08 2016

I’ve been a bit mad preparing for an upcoming conference, so I haven’t had a lot of time lately to blog about interesting developments in the conservation world. However, it struck me today that my preparations provide ideal material for a post about the future of Africa’s biodiversity.

I’ve been lucky enough to be invited to the University of Pretoria Mammal Research Unit‘s 50^th Anniversary Celebration conference to be held from 12-16 September this year in Kruger National Park. Not only will this be my first time to Africa (I know — it has taken me far too long), the conference will itself be in one of the world’s best-known protected areas.

While decidedly fortunate to be invited, I am a bit intimidated by the line-up of big brains that will be attending, and of the fact that I know next to bugger all about African mammals (in a conservation science sense, of course). Still, apparently my insight as an outsider and ‘global’ thinker might be useful, so I’ve been hard at it the last few weeks planning my talk and doing some rather interesting analyses. I want to share some of these with you now beforehand, although I won’t likely give away the big prize until after I return to Australia.

I’ve been asked to talk about human population pressures on (southern) African mammal species, which might seem simple enough until you start to delve into the complexities of just how human populations affect wildlife. It’s simply from the perspective that human changes to the environment (e.g., deforestation, agricultural expansion, hunting, climate change, etc.) do cause species to dwindle and become extinct faster than they otherwise would (hence the entire field of conservation science). However, it’s another thing entirely to attempt to predict what might happen decades or centuries down the track. Read the rest of this entry »

Comments : 6 Comments »
Tags: Africa, agriculture, biodiversity, conservation, consumption, human population, mammals, overpopulation, roads, southern Africa, wildlife
Categories : Africa, agriculture, anthropocene, biodiversity, carbon, China, climate change, conference, conservation, conservation biology, deforestation, demography, development, economics, exploitation, extinction, fire, fragmentation, habitat loss, harvest, poaching, population dynamics, poverty, roads, synergies

Rich and stable communities most vulnerable to change

16 08 2016

I’ve just read an interesting new study that was sent to me by the lead author, Giovanni Strona. Published the other day in Nature Communications, Strona & Lafferty’s article entitled Environmental change makes robust ecological networks fragile describes how ecological communities (≈ networks) become more susceptible to rapid environmental changes depending on how long they’ve had to evolve and develop under stable conditions.

Using the Avida Digital Evolution Platform (a free, open-source scientific software platform for doing virtual experiments with self-replicating and evolving computer programs), they programmed evolving host-parasite pairs in a virtual community to examine how co-extinction rate (i.e., extinctions arising in dependent species — in this case, parasites living off of hosts) varied as a function of the complexity of the interactions between species.

Starting from a single ancestor digital organism, the authors let evolve several artificial life communities for hundred thousands generation under different, stable environmental settings. Such communities included both free-living digital organisms and ‘parasite’ programs capable of stealing their hosts’ memory. Throughout generations, both hosts and parasites diversified, and their interactions became more complex. Read the rest of this entry »

Comments : 1 Comment »
Tags: biodiversity, co-extinctions, community ecology, ecological network, Extinctions, host, parasite, resilience, stability
Categories : biodiversity, bottom-up ecology, climate change, conservation, ecology, ecosystem function, evolution, exploitation, extinction, function, invasive species

More things stay the same, more we retrogress

20 07 2016

Within six months of Abbott and the Coalition seizing power in the 2013 Australian election, decades—if not centuries—of environmental damage and retrograde policies unfolded. But this was no run-of-the-mill incompetence and neglect by government—this was an all-out attack on anything with the merest whiff of environmental protection. The travesty is well-documented, from infamously axing both the carbon-pricing scheme and climate commission, eradicating Labor’s 80% emissions-reduction target by 2050, diluting the Renewable Energy Target, refusing to commit to enforcing the Illegal Logging Prohibition Act (fortunately, this is now law), defunding the only independent legal entity available to limit environmentally destructive development (Environmental Defenders Office), to even attempting to remove the rights of environmental groups to challenge development proposals (thankfully, that failed).

The Coalition’s backward and ineffectual climate change-mitigation policies alone are evidence enough for long-term damage, but their war on the environment in general means that even the future election of a more environmentally responsible government will not undo the damage quickly, if at all. As a result of these and other nearsighted policies, Australia remains one of the highest per-capita greenhouse-gas emitters on the planet, has one of the highest per-capita water uses of any nation, leads the world in mammal extinctions, continues to deforest its already forest-poor landscape, and is a society utterly unprepared to deal with the future challenges of a degraded planet.
Read the rest of this entry »

Comments : 1 Comment »
Tags: Australia, climate change, energy, Environment Minister, environmental policy, Greg Hunt, Josh Frydenberg, mitigation, politics
Categories : Australia, biodiversity, biowealth, carbon, climate change, climate shift, conservation, corruption, deforestation, ecology, environmental policy, environmental science, extinction, fragmentation, governance, mammal, management, poverty, protected area, research, science, threatened species, water

George Hubert Wilkins — Australia’s first whitefella conservationist?

6 07 2016

source: http://goo.gl/do6Q85

As many of you know, I have held the ‘Sir Hubert Wilkins Chair of Climate Change’ at the University of Adelaide since January 2015. My colleague and friend, Barry Brook, was the foundation Chair-holder from 2006-2014.

Initially set up by Government of South Australia to “… advise government, industry, and the community on how to tackle climate change …”, it now is only a titular position based at the University. While I certainly try to live up to the aims of the Chair, it’s even more difficult to live up to the namesake himself — Sir George Hubert Wilkins.

Given I’ve held the position now for over a year and half, I’ve had plenty of time to read about this legendary South Australian (I do choose my words carefully here). Despite most Australians having never heard of the man, it is my opinion that he should be as well known in this country as other whitefella explorers such as Douglas Mawson, Matthew Flinders, Robert Burke, William Wills, and Charles Sturt.

Sadly, he is not well-known, for a litany of possible reasons ranging from spending so much time out of Australia, never having a formal qualification in many of the skills in which he excelled (e.g., geography, meteorology, aviation, engineering, cinematography, biology, etc.), disrespect from other contemporary Australian explorers, and some rather bizarre behaviour later in his career. The list of this man’s achievements is staggering, as was his ability to thumb his nose at death (who, I might add, tried her hardest to escort him off this mortal coil many times well before a heart attack claimed him at the age of 70).

Many books have been written about Wilkins, but as I slowly make my way through some of the better-written tomes, one unsung aspect of his career has struck a deep chord within me — it turns out that Wilkins was also a extremely concerned biodiversity conservationist. Read the rest of this entry »

Comments : 3 Comments »
Tags: Australia, conservation, deforestation, Environmentalism, extinction, George Wilkins, Hubert Wilkins, Sir George Hubert Wilkins
Categories : Australia, conservation, deforestation, extinction, habitat loss

Buying time

27 06 2016

Originally published in the Otago Daily Times by Tom McKinlay

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If we don’t act soon, the world we leave our children will be in a sorry state indeed, leading Australian scientist Prof Corey Bradshaw tells Tom McKinlay.

Prof Corey Bradshaw’s 9-year-old daughter lives what sounds an idyllic existence. On their small farm outside Adelaide in South Australia, she has her chickens and her dogs and her cats, her goats and her sheep.

She’s an only child, but is not short of attention from adults and reads voraciously.

She has big plans; there are at least 25 careers she likes the look of, that she’ll undertake simultaneously: farmer, wildlife rescuer, self-sufficient bush dweller – feeding herself by shooting arrows at fish – scientist and more.

She is optimistic about the future. As she should be. A 9-year-old girl living in Australia in 2016 should regard the sky as no limit at all.

All this I learn from her father, ecologist Prof Bradshaw, who talks of his daughter with an enthusiasm unbounded.

It is fair to assume she has picked up some of her interest in the natural world from him.

He holds the Sir Hubert Wilkins Chair of Climate Change in the School of Biological Sciences at the University of Adelaide.

And the ecologist, conservation biologist and systems modeller – with a University of Otago degree – has shared a great deal of his work with his daughter.

“She’s very much a farm kid, but because of who I am she gets to hear a lot about animal and plant systems around the world, and she’s travelled a lot with me and she’s a complete fanatic of David Attenborough,” the professor says.

So far, still so idyllic. But Prof Bradshaw’s work means he is at the forefront of alerting the world to what is not right with it.

Pollution, climate change, habitat loss, extinction.

His daughter has travelled with him to see species that might not be with us by the time she grows up.

“She’s hyper-aware of extinctions, in particular, and how climate change is contributing to that,” Prof Bradshaw says.

“I don’t pull any punches with her.”

In fact, he made her cry when she was 5 explaining climate change. She hasn’t needed to travel to know the pot is on the boil. Fires have forced the family to flee its South Australian property several times, not just at the height of summer.

One of the worst fires in the region struck in May a couple of years back.

“We were on the doorstep of winter and we had one of our worst fires in 20 years.”

So even without a scientist in the family, there are certain unavoidable truths for a child growing up in 21st-century Australia.

Prof Bradshaw is coming to Dunedin next month as part of the New Zealand International Science Festival to talk on climate change, looking at it from his daughter’s perspective. Read the rest of this entry »

Comments : 2 Comments »
Tags: agriculture, climate change, conflict, Economics, Emissions, human population, nuclear, refugees
Categories : agriculture, Australia, biodiversity, biowealth, climate change, climate shift, conservation, development, environmental policy, extinction, food, habitat loss, health, human overpopulation, New Zealand, poverty, science

Extinction synergy: deadly combination of human hunting & climate change wrote off Patagonian giants

20 06 2016

Here’s a paper we’ve just had published in Science Advances (Synergistic roles of climate warming and human occupation in Patagonian megafaunal extinctions during the Last Deglaciation). It’s an excellent demonstration of our concept of extinction synergies that we published back in 2008.

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Giant Ice Age species including elephant-sized sloths and powerful sabre-toothed cats that once roamed the windswept plains of Patagonia, southern South America, were finally felled by a perfect storm of a rapidly warming climate and humans, a new study has shown.

Research published on Saturday in Science Advances, has revealed that it was only when the climate warmed, long after humans first arrived in Patagonia, did the megafauna suddenly die off around 12,300 years ago.

The timing and cause of rapid extinctions of the megafauna has remained a mystery for centuries.

“Patagonia turns out to be the Rosetta Stone – it shows that human colonisation didn’t immediately result in extinctions, but only as long as it stayed cold”. “Instead, more than 1000 years of human occupation passed before a rapid warming event occurred, and then the megafauna were extinct within a hundred years.”

The researchers, including from the University of Colorado Boulder, University of New South Wales and University of Magallanes in Patagonia, studied ancient DNA extracted from radiocarbon-dated bones and teeth found in caves across Patagonia, and Tierra del Fuego, to trace the genetic history of the populations. Species such as the South American horse, giant jaguar and sabre-toothed cat, and the enormous one-tonne short-faced bear (the largest land-based mammalian carnivore) were found widely across Patagonia, but seemed to disappear shortly after humans arrived. Read the rest of this entry »

Comments : 2 Comments »
Tags: climate change, extinction, extinction synergy, glaciation, Ice Age, megafauna, synergies
Categories : biodiversity, climate change, climate shift, DNA, ecology, extinction, genetics, South America

Species-area & species-accumulation curves not the same

30 05 2016

I’ve just read an elegant little study that has identified the main determinants of differences in the slope of species-area curves and species-accumulation curves.

That’s a bit of a mouthful for the uninitiated, so if you don’t know much about species-area theory, let me give you a bit of background for why this is an important new discovery.

Perhaps one of the only ‘laws’ in ecology comes from the observation that as you sample from larger and larger areas of any habitat type, the number of species tends to increase. This of course originates from MacArthur & Wilson’s classic book, The Theory of Island Biography (1967), and while simple in basic concept, it has since developed into a multi-headed Hydra of methods, analysis, theory and jargon.

One of the most controversial aspects of generic species-area relationships is the effect of different sampling regimes, a problem I’ve blogged about before. Whether you are sampling once-contiguous forest of habitat patches in a ‘matrix’ of degraded landscape, a wetland complex, a coral reef, or an archipelago of true oceanic islands, the ‘ideal’ models and the interpretation thereof will likely differ, and in sometimes rather important ways from a predictive and/or applied perspective. Read the rest of this entry »

Comments : 2 Comments »
Tags: EAR, extinction, island biogeography, SAC, SAR, species-accumulation curve, species-area curve, species-area relationship
Categories : biogeography, conservation, coral reefs, ecology, endemism, extinction, extinction debt, habitat loss, island biogeography, species-area curve

One-two carbon punch of defaunation

30 04 2016

I’ve just read a well-planned and lateral-thinking paper in Nature Communications that I think readers of CB.com ought to appreciate. The study is a simulation of a complex ecosystem service that would be nigh impossible to examine experimentally. Being a self-diagnosed fanatic of simulation studies for just such purposes, I took particular delight in the results.

In many ways, the results of the paper by Osuri and colleagues are intuitive, but that should never be a reason to avoid empirical demonstration of a suspected phenomenon because intuition rarely equals fact. The idea itself is straightforward, but takes more than a few logical steps to describe: Read the rest of this entry »

Comments : 1 Comment »
Tags: carbon, climate change, defaunation, deforestation, ecosystem services, forests, fragmentation, wildlife
Categories : Asia, Australia, biodiversity, biowealth, bushmeat, carbon, climate change, climate shift, conservation, decline, deforestation, ecosystem function, ecosystem services, extinction, fragmentation, habitat loss, harvest, logging, modelling

Most-Bestest Environment Minister in the World, Ever

4 04 2016

Our Most-Bestest Minister Ever (i.e., the bloke on the left; interestingly, the bloke on the right leads one of the few countries in the world with a higher per capita emissions rate than Australia)

Australia has an appalling environmental record — hell, I have even written an entire book on our sorry state of environmental affairs. Of course, environmental damage is a slow accumulation of bad political decisions, neglect, corruption, greed and society’s general I-couldn’t-give-a-shit attitude, but the record of our recent government demonstrates not just classic political buffoonery and neglect, but an outright attack on the environment.

So it was impossible to restrain a disgusted guffaw when, in February this year, our ‘Environment’ Minister won the coveted ‘Best Minister’ in the World award at the World Government Summit in Dubai by Sheikh Mohammed Bin Rashid Al Maktoum, Vice President and Prime Minister of the United Arab Emirates and Ruler of Dubai.

Deserved ridicule aside, I was asked recently by The Conversation to contribute to a special report examining the profile performance of cabinet and shadow cabinet ministers, which is not only a responsibility I take seriously, but an honour to be able to provide a serious and objective appraisal of our Most-Bestest Minister Ever. My contribution dealt specifically with the environmental portfolio, so I appraised both the sitting Minister and the Shadow Minister. Judge for yourself based on their performances. Read the rest of this entry »

Comments : 3 Comments »
Tags: Australia, biodiversity, climate change, deforestation, environment, Environment Minister, Great Barrier Reef, Greg Hunt, Mark Butler, politics
Categories : Australia, carbon, carbon trading, climate change, climate shift, corruption, deforestation, development, environmental policy, extinction, fragmentation, governance, habitat loss, marine protected area, protected area

How to find fossils

30 03 2016

Many palaeontologists and archaeologists might be a little put out by the mere suggestion that they can be told by ecologists how to do their job better. That is certainly not our intention.

Like fossil-hunting scientists, ecologists regularly search for things (individuals of species) that are rare and difficult to find, because surveying the big wide world for biodiversity is a challenge that we have faced since the dawn of our discipline. In fact, much of the mathematical development of ecology stems from this probabilistic challenge — for example, species distribution models are an increasingly important component of both observational and predictive ecology.

But the palaeo types generally don’t rely on mathematical models to ‘predict’ where fossils might be hiding just under the surface. Even I’ve done what most do when trying to find a fossil — go to a place where fossils have already been found and start fossicking. I’ve done this now with very experienced sedimentary geologists in the Flinders Rangers looking for 550 million year-old Ediacaran fossils, and most recently searching for Jurassic fossils (mainly ammonites) on the southern coast of England (Devon’s Jurassic Coast). My prized ammonite find is shown in the photo to the left.

If you’ve read anything on this blog before, you’ll probably know that I’m getting increasingly excited about palaeo-ecology, with particular emphasis on Australia’s late-Pleistocene and early Holocene mass-extinction of megafauna. So with a beautiful, brand-new, shiny, and quality-rated megafauna dataset¹, we cheekily decided to take fossil hunting to the next level by throwing mathematics at the problem.

Just published² in PloS One, I’m happy to announce our newest paper entitled Where to dig for fossils: combining climate-envelope, taphonomy and discovery models.

Of course, we couldn’t just treat fossil predictions like ecological ones — there are a few more steps involved because we are dealing with long-dead specimens. Our approach therefore involved three steps: Read the rest of this entry »

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Tags: Fossil, Genyornis, megafauna, species distribution model
Categories : bioclimatic envelope, climate change, extinction, modelling, palaeo-ecology

Sensitive numbers

22 03 2016

A sensitive parameter

You couldn’t really do ecology if you didn’t know how to construct even the most basic mathematical model — even a simple regression is a model (the non-random relationship of some variable to another). The good thing about even these simple models is that it is fairly straightforward to interpret the ‘strength’ of the relationship, in other words, how much variation in one thing can be explained by variation in another. Provided the relationship is real (not random), and provided there is at least some indirect causation implied (i.e., it is not just a spurious coincidence), then there are many simple statistics that quantify this strength — in the case of our simple regression, the coefficient of determination (R²) statistic is a usually a good approximation of this.

In the case of more complex multivariate correlation models, then sometimes the coefficient of determination is insufficient, in which case you might need to rely on statistics such as the proportion of deviance explained, or the marginal and/or conditional variance explained.

When you go beyond this correlative model approach and start constructing more mechanistic models that emulate ecological phenomena from the bottom-up, things get a little more complicated when it comes to quantifying the strength of relationships. Perhaps the most well-known category of such mechanistic models is the humble population viability analysis, abbreviated to PVA^§.

Let’s take the simple case of a four-parameter population model we could use to project population size over the next 10 years for an endangered species that we’re introducing to a new habitat. We’ll assume that we have the following information: the size of the founding (introduced) population (n), the juvenile survival rate (S_j, proportion juveniles surviving from birth to the first year), the adult survival rate (S_a, the annual rate of surviving adults to year 1 to maximum longevity), and the fertility rate of mature females (m, number of offspring born per female per reproductive cycle). Each one of these parameters has an associated uncertainty (ε) that combines both measurement error and environmental variation.

If we just took the mean value of each of these three demographic rates (survivals and fertility) and project a founding population of n = 10 individuals for 1o years into the future, we would have a single, deterministic estimate of the average outcome of introducing 10 individuals. As we already know, however, the variability, or stochasticity, is more important than the average outcome, because uncertainty in the parameter values (ε) will mean that a non-negligible number of model iterations will result in the extinction of the introduced population. This is something that most conservationists will obviously want to minimise.

So each time we run an iteration of the model, and generally for each breeding interval (most often 1 year at a time), we choose (based on some random-sampling regime) a different value for each parameter. This will give us a distribution of outcomes after the 10-year projection. Let’s say we did 1000 iterations like this; taking the number of times that the population went extinct over these iterations would provide us with an estimate of the population’s extinction probability over that interval. Of course, we would probably also vary the size of the founding population (say, between 10 and 100), to see at what point the extinction probability became acceptably low for managers (i.e., as close to zero as possible), but not unacceptably high that it would be too laborious or expensive to introduce that many individuals. Read the rest of this entry »

Comments : 4 Comments »
Tags: ecological models, emulator, extinction risk, global sensitivity analysis, iterations, perturbation analysis, population viability analysis, PVA, sensitivity analysis, simulation
Categories : bottom-up ecology, conservation, conservation biology, conservation ecology, demography, extinction, investment, management, mathematics, modelling, mvp, population dynamics, population viability analysis, PVA

Biowealth

24 02 2016

While I’ve blogged about this before in general terms (here and here), I thought it wise to reproduce the (open-access) chapter of the same name published in late 2013 in the unfortunately rather obscure book The Curious Country produced by the Office of the Chief Scientist of Australia. I think it deserves a little more limelight.

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As I stepped off the helicopter’s pontoon and into the swamp’s chest-deep, tepid and opaque water, I experienced for the first time what it must feel like to be some other life form’s dinner. As the helicopter flittered away, the last vestiges of that protective blanket of human technological innovation flew away with it.

Two other similarly susceptible, hairless, clawless and fangless Homo sapiens and I were now in the middle of one of the Northern Territory’s largest swamps at the height of the crocodile-nesting season. We were there to collect crocodile eggs for a local crocodile farm that, ironically, has assisted the amazing recovery of the species since its near-extinction in the 1960s. Removing the commercial incentive to hunt wild crocodiles by flooding the international market with scar-free, farmed skins gave the dwindling population a chance to recover.

Conservation scientists like me rejoice at these rare recoveries, while many of our fellow humans ponder why we want to encourage the proliferation of animals that can easily kill and eat us. The problem is, once people put a value on a species, it is usually consigned to one of two states. It either flourishes as do domestic crops, dogs, cats and livestock, or dwindles towards or to extinction. Consider bison, passenger pigeons, crocodiles and caviar sturgeon.

As a conservation scientist, it’s my job not only to document these declines, but to find ways to prevent them. Through careful measurement and experiments, we provide evidence to support smart policy decisions on land and in the sea. We advise on the best way to protect species in reserves, inform hunters and fishers on how to avoid over-harvesting, and demonstrate the ways in which humans benefit from maintaining healthy ecosystems. Read the rest of this entry »

Comments : 5 Comments »
Tags: Anthropocene, biodiversity, biowealth, ecosystem services, extinction
Categories : alien species, anthropocene, Australia, biodiversity, biosequestration, biowealth, carbon, cattle, caviar, climate change, conservation, conservation biology, decline, deforestation, ecology, ecosystem, ecosystem function, ecosystem services, environmental economics, environmental policy, extinction, fish, fisheries, food, function, habitat loss, human overpopulation, invasive species, mammal, meso-predator release, predation, predator, research, trophic cascades, water

Bad science

10 02 2016

In addition to the surpassing coolness of reconstructing long-gone ecosystems, my new-found enthusiasm for palaeo-ecology has another advantage — most of the species under investigation are already extinct.

That might not sound like an ‘advantage’, but let’s face it, modern conservation ecology can be bloody depressing, so much so that one sometimes wonders if it’s worth it. It is, of course, but there’s something marvellously relieving about studying extinct systems for the simple reason that there are no political repercussions. No self-serving, plutotheocratic politician can bugger up these systems any more. That’s a refreshing change from the doom and gloom of modern environmental science!

But it’s not all sweetness and light, of course; there are still people involved, and people sometimes make bad decisions in an attempt to modify the facts to suit their creed. The problem is when these people are the actual scientists involved in the generation of the ‘facts’.

As I alluded to a few weeks ago with the publication of our paper in Nature Communications describing the lack of evidence for a climate effect on the continental-scale extinctions of Australia’s megafauna, we have a follow-up paper that has just been published online in Proceedings of the Royal Society B — What caused extinction of the Pleistocene megafauna of Sahul? led by Chris Johnson of the University of Tasmania.

After our paper published earlier this month, this title might seem a bit rhetorical, so I want to highlight some of the reasons why we wrote the review. Read the rest of this entry »

Comments : 2 Comments »
Tags: Australia, Climate, climate change, EPICA, fossils, human hunting, Judith Field, megafauna, Michael Archer, Signor-Lipps effect, Stephen Wroe, taphonomy
Categories : anthropocene, Australia, climate change, climate shift, conservation, environmental science, exploitation, extinction, science, scientific publishing, synergies

It’s not always best to be the big fish

3 02 2016

Loosely following the theme of last week’s post, it’s now fairly well established that humans tend to pick on the big species first.

From fewer big trees, declines of big carnivores, elephant & rhino poaching, to fishing down the web, big species tend to cop it hardest when it comes to human-caused ecological disturbance.

While there are a lot of different combinations of traits that make some species more vulnerable to extinction than others (see examples for legumes, amphibians, sharks & teleosts, and mammals), one of the main ones is species size.

Generally speaking, larger species tend to produce fewer offspring and breed later in life than smaller species. This means that despite larger species tending to live longer than their smaller counterparts, their ‘slow’ reproductive output means that they are generally more susceptible to rapid environmental change (mainly via human intervention). In other words, their capacity for self-replacement is often too low to counteract the offtake from direct exploitation or habitat loss.

Despite a reasonable scientific understanding of this extinction-risk principle, the degree to which human disturbance affects species’ distributions is much less well quantified, and this is especially true for marine species.

I’m proud to announce another fascinating paper led by my postdoc, Camille Mellin, that has just come out online in Nature Communications: Humans and seasonal climate variability threaten large-bodied coral reef fish with small ranges.

With the world’s largest combined dataset of coral reef fish surveys for the entire Indo-Pacific (including the coral reef fish biodiversity hotspot — the Coral Triangle), we examined which conditions best described the distribution of fishes over a range of body sizes. Read the rest of this entry »

Comments : 1 Comment »
Tags: biodiversity, Biogeography, coral reef, distribution, energy, exploitation, Fish, fishes, human disturbance, Overfishing, range, richness, species' range
Categories : biodiversity, conservation, conservation biology, coral reefs, exploitation, extinction, fish, fisheries, habitat loss, harvest, hotspot, human overpopulation, management, marine protected area, predation, predator

No evidence climate change is to blame for Australian megafauna extinctions

29 01 2016

Last July I wrote about a Science paper of ours demonstrating that there was a climate-change signal in the overall extinction pattern of megafauna across the Northern Hemisphere between about 50,000 and 10,000 years ago. In that case, it didn’t have anything to do with ice ages (sorry, Blue Sky Studios); rather, it was abrupt warming periods that exacerbated the extinction pulse instigated by human hunting.

Contrary to some appallingly researched media reports, we never claimed that these extinctions arose only from warming, because the evidence is more than clear that humans were the dominant drivers across North America, Europe and northern Asia; we simply demonstrated that warming periods had a role to play too.

A cursory glance at the title of this post without appreciating the complexity of how extinctions happen might lead you to think that we’re all over the shop with the role of climate change. Nothing could be farther from the truth.

Instead, we report what the evidence actually says, instead of making up stories to suit our preconceptions.

So it is with great pleasure that I report our new paper just out in Nature Communications, led by my affable French postdoc, Dr Frédérik Saltré: Climate change not to blame for late Quaternary megafauna extinctions in Australia.

Of course, it was a huge collaborative effort by a crack team of ecologists, palaeontologists, geochronologists, paleo-climatologists, archaeologists and geneticists. Only by combining the efforts of this diverse and transdisciplinary team could we have hoped to achieve what we did. Read the rest of this entry »

Comments : 5 Comments »
Tags: Aboriginal, Aborigine, Australia, ecology, extinction, geochronology, GRIWM, megafauna, modelling, palaeontology, Signor-Lipps effect
Categories : Australia, climate change, conservation, exploitation, extinction, harvest, modelling, science, synergies

Getting your conservation science to the right people

22 01 2016

A perennial lament of nearly every conservation scientist — at least at some point (often later in one’s career) — is that the years of blood, sweat and tears spent to obtain those precious results count for nought in terms of improving real biodiversity conservation.

Conservation scientists often claim, especially in the first and last paragraphs of their papers and research proposals, that by collecting such-and-such data and doing such-and-such analyses they will transform how we manage landscapes and species to the overall betterment of biodiversity. Unfortunately, most of these claims are hollow (or just plain bullshit) because the results are either: (i) never read by people who actually make conservation decisions, (ii) not understood by them even if they read the work, or (iii) never implemented because they are too vague or too unrealistic to translate into a tangible, positive shift in policy.

A depressing state of being, I know.

This isn’t any sort of novel revelation, for we’ve been discussing the divide between policy makers and scientists for donkey’s years. Regardless, the whinges can be summarised succinctly: Read the rest of this entry »