How to improve (South Australia’s) biodiversity prospects

9 04 2019
Fig2

Figure 2 (from the article). Overlaying the South Australia’s Protected Areas boundary data with the Interim Biogeographic Regionalisation for Australia layer indicates that 73.2% of the total protected area (excluding Indigenous Protected Areas) in South Australia lies in the arid biogeographic regions of Great Victoria Desert (21.1%), Channel Country (15.2%), Simpson Strzelecki Dunefields (14.0%), Nullarbor (9.8%), Stony Plains (6.6%), Gawler (6.0%), and Hampton (0.5%). The total biogeographic-region area covered by the remaining Conservation Reserves amounts to 26.2%. Background blue shading indicates relative average annual rainfall.

If you read CB.com regularly, you’ll know that late last year I blogged about the South Australia 2108 State of the Environment Report for which I was commissioned to write an ‘overview‘ of the State’s terrestrial biodiversity.

At the time I whinged that not many people seemed to take notice (something I should be used to by now in the age of extremism and not giving a tinker’s about the future health of the planet — but I digress), but it seems that quietly, quietly, at least people with some policy influence here are starting to listen.

Not satisfied with merely having my report sit on the virtual shelves at the SA Environment Protection Authority, I decided that I should probably flesh out the report and turn it into a full, peer-reviewed article.

Well, I’ve just done that, with the article now published online in Rethinking Ecology as a Perspective paper.

The paper is chock-a-block with all the same sorts of points I covered last year, but there’s a lot more, and it’s also a lot better referenced and logically sequenced.

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Categories : agriculture, Australia, biodiversity, biowealth, birds, carbon, climate change, connectivity, conservation, conservation biology, conservation ecology, decline, deforestation, development, drought, ecology, economics, ecosystem, ecosystem function, endemic, endemism, environmental policy, exploitation, extinction, extinction debt, Flinders University, fragmentation, function, governance, habitat loss, harvest, human-wildlife conflict, invasive species, investment, livestock, management, meso-predator release, monitoring, Murray-Darling, planning, pollination, predation, prioritisation, protected area, recovery, reforestation, research, reserve, restoration, South Australia, southern Australia, sustainability, threatened species, vegetation

Ecological Network Analysis Workshop

8 04 2019

network-transformation-optimizednfv-16x9.jpg.rendition.intel.web.480.270We are most fortunate that Dr Giovanni Strona of the EU Joint Research Centrein Ispra, Italy, will be visiting Flinders University for most of April. As a recipient of the prestigious International Visitor Fellowship, Dr Strona has kindly agreed to give a day-long (and hands-on) workshop in network modelling.

What is network analysis? Well, anything that is connected to other things is ostensibly a ‘network’ — think social-media users, neurones, electric elements in a circuit, or species in an ecological community. It doesn’t really matter what the ‘nodes’ of a network actually represent, because all networks more or less share the same properties. The analysis of network structure and behaviour is what Dr Strona will focus on for the workshop.

Being ecologists, we will of course be primarily interested in ecological networks, but maths and coding is essentially the same for all types of networks. Interested in attending this free and rare opportunity? If so, please register your interest here.

The workshop will be held at the Bedford Park Campus of Flinders University from 09:00-17:00 on 29 April 2019. The outline of the workshop is described in more detail below. Read the rest of this entry »


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Categories : community ecology, conservation, ecology, modelling

Thirsty forests

1 02 2019

Climate change is one ingredient of a cocktail of factors driving the ongoing destruction of pristine forests on Earth. We here highlight the main physiological challenges trees must face to deal with increasing drought and heat.

Forests experiencing embolism after a hot drought. The upper-left pic shows Scots (Pinus sylvestris) and black (P. nigra) pines in Montaña de Salvador (Espuñola, Barcelona, Spain) during a hot Autumn in 2015 favouring a massive infestation by pine processionary caterpillars (Thaumetopoea pityocampa) and tree mortality the following year (Lluís Brotons/CSIC in InForest-CREAF-CTFC). To the right, an individual holm oak (Quercus ilex) bearing necrotic branches in Plasencia (Extremadura, Spain) during extreme climates from 2016 to 2017, impacting more than a third of the local oak forests (Alicia Forner/CSIC). The lower-left pic shows widespread die-off of trembling aspen (Populus tremuloides) from ‘Aspen Parkland’ (Saskatchewan, Canada) in 2004 following extreme climates in western North America from 2001 to 2002 (Mike Michaelian/Canadian Forest Service). To the right, several dead aspens near Mancos (Colorado, USA) where the same events hit forests up to one-century old (William Anderegg).

A common scene when we return from a long trip overseas is to find our indoor plants wilting if no one has watered them in our absence. But … what does a thirsty plant experience internally?

Like animals, plants have their own circulatory system and a kind of plant blood known as sap. Unlike the phloem (peripheral tissue underneath the bark of trunks and branches, and made up of arteries layered by live cells that transport sap laden with the products of photosynthesis, along with hormones and minerals — see videos here and here), the xylem is a network of conduits flanked by dead cells that transport water from the roots to the leaves through the core of the trunk of a tree (see animation here). They are like the pipes of a building within which small pressure differences make water move from a collective reservoir to every neighbours’ kitchen tap.

Water relations in tree physiology have been subject to a wealth of research in the last half a decade due to the ongoing die-off of trees in all continents in response to episodes of drought associated with temperature extremes, which are gradually becoming more frequent and lasting longer at a planetary scale (1). 

Embolised trees

During a hot drought, trees must cope with a sequence of two major physiological challenges (2, 3, 4). More heat and less internal water increase sap tension within the xylem and force trees to close their stomata (5). Stomata are small holes scattered over the green parts of a plant through which gas and water exchanges take place. Closing stomata means that a tree is able to reduce water losses by transpiration by two to three orders of magnitude. However, this happens at the expense of halting photosynthesis, because the main photosynthetic substrate, carbon dioxide (CO2), uses the same path as water vapour to enter and leave the tissues of a tree.

If drought and heat persist, sap tension reaches a threshold leading to cavitation or formation of air bubbles (6). Those bubbles block the conduits of the xylem such that a severe cavitation will ultimately cause overall hydraulic failure. Under those conditions, the sap does not flow, many parts of the tree dry out gradually, structural tissues loose turgor and functionality, and their cells end up dying. Thus, the aerial photographs showing a leafy blanket of forest canopies profusely coloured with greys and yellows are in fact capturing a Dantesque situation: trees in photosynthetic arrest suffering from embolism (the plant counterpart of a blood clot leading to brain, heart or pulmonary infarction), which affects the peripheral parts of the trees in the first place (forest dieback).

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Categories : anthropocene, biodiversity, climate change, climate shift, conservation, conservation biology, decline, deforestation, disease, drought, ecology, extinction, function, habitat loss, health, research

Influential conservation ecology papers of 2018

17 12 2018

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For the last five years I’ve published a retrospective list of the ‘top’ 20 influential papers of the year as assessed by experts in F1000 Prime — so, I’m doing so again for 2018 (interesting side note: six of the twenty papers highlighted here for 2018 appear in Science magazine). See previous years’ posts here: 2017, 2016, 2015, 2014, and 2013.

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Categories : anthropocene, aquaculture, Australia, biodiversity, biowealth, carbon, climate change, climate shift, community ecology, connectivity, conservation, conservation biology, conservation ecology, coral reefs, decline, deforestation, demography, ecology, economics, ecosystem, ecosystem function, ecosystem services, environmental policy, environmental science, exploitation, extinction, extinction debt, fish, fisheries, food, fragmentation, function, habitat loss, harvest, human overpopulation, invasive species, management, marine, marine protected area, modelling, pollination, pollution

Perseverance eventually gets the policy makers’ attention

10 12 2018

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My entry badge today to the South Australian Parliament (sorry for the shitty reproduction, but it’s a shitty photo of a shitty photo)

I’ve often commented on it over the years, as well as written about it both in my latest book, as well as featured it here on CB.com, that little of the conservation science we do appears to reach the people making all the decisions. This is, of course, a massive problem because so much policy that affects biodiversity is not evidence-based, nor do we seem to be getting any better at telling them how buggered our natural world is.

Even the Extinction Rebellion, or school kids screaming in the streets about lack of climate-change policies appears unable to budge the entrenched, so what hope do we lonely little scientists have of getting in a Minister’s ear? It’s enough to make one depressed.

look-at-me-girlSo, we go through the motions; we design ideal reserves with the aid of our computers, we tell people how much to fish, we tell them why feral species are bad, etc., etc., and then we publish our findings and walk away. We might do a little more and shout our messages loudly from the media rooftops, or submit comments to proposed policies, or even draft open letters or petitions. Yet no matter how hard we seem to try, our messages of urgency and despair largely fall on deaf ears.

It’s enough to make you reconsider and not bothering at all.

But! Despite my obviously jaded perspective, two things have happened to me recently that attest to how a little perseverance, sticking to your guns, and staying on message can reach the ears of the powerful. My examples are minuscule in the grand scheme of things, nor will they necessarily translate into anything really positive on the ground; yet, they give me a modicum of hope that we can make a positive difference.

The first event happened a few weeks ago after we did a press release about our paper on co-extinction cascades published in Scientific Reports. Yes, it got into a few big newspapers and radio, but I thought it wouldn’t do much more than peak the punters’ interest for the typical 24-hour news cycle. However, after the initial media interest died down, I received an e-mail from one of my university’s media officers saying that the we had been cited in The Senate (one of the two houses in the Australian Parliament)! An excerpt of the transcript is shown below (you can read the whole thing — if you could be bothered — here): Read the rest of this entry »


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Categories : Australia, biodiversity, carbon, climate change, conservation, ecology, economics, ecosystem services, environmental policy, extinction, governance, invasive species, management, monitoring, science, science communication, South Australia

Global warming causes the worst kind of extinction domino effect

25 11 2018

Dominos_Rough1-500x303Just under two weeks ago, Giovanni Strona and I published a paper in Scientific Reports on measuring the co-extinction effect from climate change. What we found even made me — an acknowledged pessimist — stumble in shock and incredulity.

But a bit of back story is necessary before I launch into describing what we discovered.

Last year, some Oxbridge astrophysicists (David Sloan and colleagues) published a rather sensational paper in Scientific Reports claiming that life on Earth would likely survive in the face of cataclysmic astrophysical events, such as asteroid impacts, supernovae, or gamma-ray bursts. This rather extraordinary conclusion was based primarily on the remarkable physiological adaptations and tolerances to extreme conditions displayed by tardigrades1 — those gloriously cute, but tiny (most are around 0.5 mm long as adults) ‘water bears’ or ‘moss piglets’ — could you get any cuter names?

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Found almost everywhere and always (the first fossils of them date back to the early Cambrian over half a billion years ago), these wonderful little creatures are some of the toughest metazoans (multicellular animals) on the planet. Only a few types of extremophile bacteria are tougher.

So, boil, fry or freeze the Earth, and you’ll still have tardigrades around, concluded Sloan and colleagues.

When Giovanni first read this, and then passed the paper along to me for comment, our knee-jerk reaction as ecologists was a resounding ‘bullshit!’. Even neophyte ecologists know intuitively that because species are all interconnected in vast networks linked by trophic (who eats whom), competitive, and other ecological functions (known collectively as ‘multiplex networks’), they cannot be singled out using mere thermal tolerances to predict the probability of annihilation. Read the rest of this entry »


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Categories : bottom-up ecology, climate change, climate shift, community ecology, conservation, conservation ecology, ecology, extinction, extinction debt, extinction vortex, modelling, top-down ecology

Why a (young) scientist should blog

12 11 2018

I started to blog in the middle of my PhD, exactly on 17 February 2011 — as a scientist I remember my first blog like a soccer-loving kid might remember his/her first soccer ball. Postgraduates from ACAD have recently asked me to give a talk about my blogging experience, and I couldn’t resist turning my talk into a blog.

Salvador Herrando-Pérez

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The cover of the February (polar bears) and December (water flea) 2017 issues of the Spanish magazine Quercus featured two of my popular-science articles. Founded in 1981, and with a current print run of some 15,000 copies monthly, Quercus has pioneered the dissemination of ecological and environmental science with a conservation edge in Spain and survived the digitalisation age, which has recently deserved the prestigious 2018 BBVA prize for Biodiversity Conservation. My liaison with the magazine already spans seven years with 49 articles published in three theme series (conservation biology: 2011-2012; animal behaviour: 2013; and climate change: active since January 2017 in collaboration with my colleague David Vieites).

I write in blogs, but I am not a blogger in the sense of owning and managing a blog. More exactly, I write about science using a language that should be understandable by an audience of scientists and, primarily, non-scientists. The best English expression I have found to qualify such activity is ‘popular science’ (I use it interchangeably with ‘blog’ hereafter). And blogs are just one platform (internet) to publish popular science.

In fact, I publish popular science on a regular basis here in ConservationBytes, and in Quercus: a printed Spanish-language magazine about ecology and biodiversity. My articles in those outlets typically synthesise the findings, and expand the background and implications, of high-profile research papers from the primary literature. Sometimes, I also write blogs to maximise the audience of my own publications (e.g., here and here), or to discuss a topic of general interest (e.g., numerical literacy). I have listed all my blogs on ConservationBytes at the end of the text.

Frankly, I had never stopped to think why I started and why I keep writing popular science. So after a bit of brainstorming, I have come up with five personal motivations which will probably resonate with those of other scientists entering the Blogosphere (1) — see here Corey’s take on the virtues of blogging.

Self-promotion

When you are in the early stage of your research career, letting your peers know that you exist is essential, unless one already publishes hot papers that everybody reads and cites, and/or you have already amassed quite a reputation in the scientific community (not my case). Let’s be clear: my blogs are bound to be read by more people than my research papers, because blogs magnify the chances of being detected by search engines (2), and because the size of the scientific community is dwarfed by the size of the internet community. Doubtless, self-promotion drew me into popular science in the first place, when I was just a PhD student — ahead of me lay some five to ten years over which I would have to compete hard for funding and publication space with a respectable crowd of other researchers, let alone to create new partnerships with colleagues in and out of my area of expertise. So, blogging initially meant like saying ‘hey! I am here, I am doing science’.

Funding/Outreach

Read the rest of this entry »


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Ecophysiological feedbacks under climate change

29 10 2018

Variability in heat tolerance among populations modifies the climate-driven periods of diurnal activity expected for ectotherm species. We illustrate this phenomenon for Iberian lizards in a paper we have just published in the Journal of Animal Ecology (blog post reproduced with permission by the Journal; see related blog).

Common wall lizard (Podarcis muralis, male) and three localities where the species is abundant in Spain, left to right including Valdesquí/Madrid (Central System), Peñagolosa/Castellón (Iberian System) and El Portalet/Huesca (The Pyrenees).

Iberia is a wonderful natural laboratory, with a complex blend of flat/hilly, open/woody and coastal/continental terrain, swept by climatic gradients of temperature and moisture. In 2013, I launched a BES-supported project about the thermal ecology of Iberian lizards and managed to drive over much of the Iberian Peninsula in fairly little time. Not being a reptile specialist myself, I was confronted by the consistent observation that lizard populations occupied very different habitats across the known distribution of each of the ~ 25 known Iberian species belonging to the family Lacertidae.

For instance, the common wall lizard (Podarcis muralis) likes water, rocks and mountains, but you can find this pencil-long reptile at the top of a summit, along the slopes or riversides of shallow and deep ravines, on little stones barely surfacing above peatland grasslands, or among the bricks of buildings. These animals must experience different local climates conditional on where they live, and adapt their thermal physiology accordingly.

Having then started a postdoc in Miguel Araújo’s lab — a world-class site for global change ecology and ‘big’ biodiversity patterns — I reviewed a sizeable body of literature looking into large-scale gradients of thermal tolerance. Most of those papers had collated (mostly) one estimate of tolerance from each of tens to thousands of species, then mapped them against regional and global metrics of climate change through sophisticated mathematical frameworks. But these studies rarely accounted for population-level thermal tolerance.

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Categories : biodiversity, climate change, climate shift, conservation, conservation biology, conservation ecology, decline, ecology, environmental policy, extinction, function, habitat loss, management, research, science, threatened species

Sex on the beach

2 10 2018
Female green turtles (Chelonia mydas) spawning (top) and diving (bottom) on Raine Island (Great Barrier Reef, Queensland, Australia) — photos courtesy of Ian Bell. This species is ‘Endangered’ globally since 1982, mainly from egg harvesting (poaching conflict in Mexico for olive ridley Lepidochelys olivacea featured by National Geographic’s video here), despite the success of conservation projects (39). Green turtles inhabit tropical and subtropical seas in all oceans. Adults can grow > 150 kg and live for up to ~ 75 years. Right after birth, juveniles venture into the open sea to recruit ultimately in coastal areas until sexual maturity. They then make their first reproductive migration, often over 1000s of km (see footage of a real dive of a camera-equipped green turtle), to reach their native sandy beaches where pregnant females will lay their eggs. Each female can deposit more than one hundred eggs in her nest, and in several clutches in the same season because they can store the sperm from multiple mating events.

When sex is determined by the thermal environment, males or females might predominate under sustained climatic conditions. A study about marine turtles from the Great Barrier Reef illustrates how feminisation of a population can be partitioned geographically when different reproductive colonies are exposed to contrasting temperatures.

Fortunately, most people in Western societies already perceive that we live in a complex blend of sexual identities, far beyond the kind of genitals we are born with. Those identities start to establish themselves in the embryo before the sixth week of pregnancy. In the commonest scenario, for a human foetus XY with one maternal chromosome (X) and one paternal (Y) chromosome, the activation of the Sry gen (unique to Y) will trigger the differentiation of testicles and, via hormonal pathways, the full set of male characteristics (1).

Absence of that gene in an XX embryo will normally lead to a woman. However, in just one of many exceptions to the rule, Sry-expression failure in XY individuals can result in sterile men or ambiguous genitals — along a full gradient of intermediate sexes and, potentially, gender identities. A 2015 Nature ‘News’ feature echoes two extraordinary cases: (i) a father of four children found to bear a womb during an hernia operation, and (ii) a pregnant mother found to host both XX and XY cells during a genetic test – with her clinical geneticist stating “… that’s the kind of science-fiction material for someone who just came in for an amniocentesis” (2). These real-life stories simply reflect that sex determination is a complex phenomenon.

Three ways of doing it

In nature, there are three main strategies of sex determination (3) — see scheme here: Read the rest of this entry »


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Categories : anthropocene, Australia, biodiversity, climate change, climate shift, conservation, coral reefs, demography, ecology, exploitation, extinction, gender, genetics, harvest, inbreeding depression, marine, ocean, population dynamics

Legacy of human migration on the diversity of languages in the Americas

12 09 2018

quechua-foto-ale-glogsterThis might seem a little left-of-centre for CB.com subject matter, but hang in there, this does have some pretty important conservation implications.

In our quest to be as transdisciplinary as possible, I’ve team up with a few people outside my discipline to put together a PhD modelling project that could really help us understand how human colonisation shaped not only ancient ecosystems, but also our own ancient cultures.

Thanks largely to the efforts of Dr Frédérik Saltré here in the Global Ecology Laboratory, at Flinders University, and in collaboration with Dr Bastien Llamas (Australian Centre for Ancient DNA), Joshua Birchall (Museu Paraense Emílio Goeldi, Brazil), and Lars Fehren-Schmitz (University of California at Santa Cruz, USA), I think the student could break down a few disciplinary boundaries here and provide real insights into the causes and consequences of human expansion into novel environments.

Interested? See below for more details?

Languages are ‘documents of history’ and historical linguists have developed comparative methods to infer patterns of human prehistory and cultural evolution. The Americas present a more substantive diversity of indigenous language stock than any other continent; however, whether such a diversity arose from initial human migration pathways across the continent is still unknown, because the primary proxy used (i.e., archaeological evidence) to study modern human migration is both too incomplete and biased to inform any regional inference of colonisation trajectories. Read the rest of this entry »


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Categories : Amazon, biogeography, connectivity, demography, ecology, ecosystem, Flinders University, mathematics, modelling, population dynamics, research, science, South America, statistics

Minister, why is the dingo no longer ‘fauna’?

7 09 2018

dead dingoSo, a few of us have just submitted a letter contesting the Western Australia Government’s recent decision to delist dingoes as ‘fauna’ (I know — what the hell else could they be?). The letter was organised brilliantly by Dr Kylie Cairns (University of New South Wales), and she and the rest of the signatories have agreed to reproduce the letter in full here on ConservationBytes.com. If you feel so compelled, please voice your distaste of this decision officially by contacting the Minister (details below).

CJA Bradshaw

Honourable Stephen Dawson MLC
Minister for Environment; Disability Services
Address: 12th Floor, Dumas House
2 Havelock Street, WEST PERTH WA 6005
(minister.dawson@dpc.wa.gov.au)

cc: Department of Biodiversity, Conservation and Attractions (biodiversity@dbca.wa.gov.au)
cc: Brendan Dooley (brendan.dooley@dpc.wa.gov.au)

Dear Minister,

The undersigned welcome the opportunity to comment on and recommend alteration of the proposed section (9)(2) order of the Biodiversity Conservation Act 2016 (BC Act) that changes the listing of the dingo from “fauna” to “non-fauna” in Western Australia. Removing the “fauna” status from dingoes has serious consequences for the management and conservation of this species and other native biota it benefits. Currently, dingoes are classed as A7, or fauna that requires a management policy. The proposed section (9)(2) order will move dingoes (as “non-fauna”) to the A5 class, meaning that dingoes must be (lethally) controlled and there will be no obligation for the Department of Biodiversity, Conservation and Attractions to have an appropriate management policy (or approval).

Currently, under the Wildlife Conservation Act 1950 (WC Act) the dingo is considered “unprotected” fauna allowing management under a Department of Biodiversity, Conservation and Attractions management policy. A section (9)(2) order demoting dingoes to “non-fauna” will remove the need for Department of Biodiversity, Conservation and Attractions management policy and instead mandate the lethal control of dingoes throughout Western Australia.

As prominent researchers in top predator ecology, biology, cultural value and genetics, we emphasise the importance of dingoes within Australian, and particularly Western Australia’s ecosystems. Dingoes are indisputably native based on the legislative definition of “any animal present in Australia prior to 1400 AD” from the BC Act. Dingoes have been present in Australia for at least 5000 years. On the Australian mainland they are now the sole non-human land-based top predator. Their importance to the ecological health and resilience of Australian ecosystems cannot be overstated. Read the rest of this entry »


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Categories : Australia, biodiversity, cat, conservation, conservation biology, dingo, ecology, ecosystem function, endemic, environmental policy, exploitation, genetics, human-wildlife conflict, introgression, kangaroo, livestock, mammal, management, meso-predator release, predation, predator, research, science, top-down ecology

Some scary stats about agriculture and biodiversity

20 07 2018

84438Last week we had the pleasure of welcoming the eminent sustainability scientist, Professor Andrew Balmford of the University of Cambridge, to our humble Ecology and Evolution Seminar Series here at Flinders University. While we couldn’t record the seminar he gave because of some of the unpublished and non-proprietary nature of some of his slides, I thought it would be interesting, useful, and thought-provoking to summarise some of the information he gave.

Andrew started off by telling us some of the environmental implications of farming worldwide. Today, existing agriculture covers more than half of ‘useable’ land (i.e., excluding unproductive deserts, etc.), and it has doubled nitrogen fixation rates from a pre-industrial baseline. Globally, agriculture is responsible for between 19 and 35% of all greenhouse gas emissions, and it has caused approximately 40% increase in observed sea-level rise (1961-2003). Not surprisingly, agriculture already occupies the regions of highest biodiversity globally, and is subsequently the greatest source of threat to species.

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Categories : agriculture, anthropocene, biodiversity, carbon, cattle, climate change, conservation, cuisine, decline, deforestation, ecology, ecosystem, ecosystem function, ecosystem services, environmental policy, exploitation, extinction, famine, food, fragmentation, habitat loss, harvest, livestock, sustainability

Greater death rates for invasive rabbits from interacting diseases

30 05 2018

When it comes to death rates for invasive European rabbits (Oryctolagus cuniculus) in Australia, it appears that 1 + 1 = 2.1.

Pt tagged rab with RHD+myxo 1 10-08

Tagged European rabbit kitten infected with myxoma virus, but that died from rabbit haemorrhagic virus disease (RHDV). Photo by David Peacock, Biosecurity South Australia.

“Canberra, we have a problem” — Sure, it’s an old problem and much less of one than it used to be back in the 1950s, but invasive rabbits are nonetheless an ecological, conservation, and financial catastrophe across Australia.

relative rabbit abundance South Australia

Semi-schematic diagram, redrawn using data from Saunders and others and extended to include the recent spread of RHDV2, showing changes in rabbit abundance in relation to the introduction of biological control agents into north-eastern South Australia. Dotted lines indicate uncertainty due to lack of continuous annual data. The broken line indicates a level of about 0.5 rabbits ha-1, below which rabbits must be held to ensure recovery of native pastures and shrubs (from B. Cooke 2018 Vet Rec doi:10.1136/vr.k2105)

Rabbits used to reach plague numbers in much of agricultural and outback Australia, but the introduction and clever manipulation of two rather effective rabbit-specific viruses and insect vectors — first, myxoma virus in 1950, European rabbit fleas in the 1960s to help spread the virus, then Spanish rabbit fleas in the 1990s to increase spread into arid areas, and then rabbit haemorrhagic disease virus (RHDV) in 1995 — have been effective in dropping rabbit abundances by an estimated 75-80% in South Australia alone since the 1950s.

Rabbits MyxomatosisTrial WardangIsland 1938

Rabbits around a waterhole at the myxomatosis trial enclosure on Wardang Island in 1938. See page for author [Public domain], via Wikimedia Commons

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Categories : agriculture, alien species, Australia, biodiversity, biowealth, conservation, conservation biology, demography, disease, ecology, environmental science, fox, invasive species, mammal, management, modelling, monitoring, predation, predator, research, South Australia

What Works in Conservation 2018

23 05 2018

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Do you have a copy of this book? If not, why not?

 

This book is free to download. This book contains the evidence for the effectiveness of over 1200 things you might do for conservation. If you don’t have a copy, go and download yourself a free one here, right now, before you even finish reading this article. Seriously. Go. You’ll laugh, you’ll cry, it’ll change your life.

Why you’ll laugh

OK, I may have exaggerated the laughing part. ‘What Works in Conservation 2018’ is a serious and weighty tome, 660 pages of the evidence for 1277 conservation interventions (anything you might do to conserve a species or habitat), assessed by experts and graded into colour-coded categories of effectiveness. This is pretty nerdy stuff, and probably not something you’ll lay down with on the beach or dip into as you enjoy a large glass of scotch (although I don’t know your life, maybe it is).

But that’s not really what it’s meant for. This is intended as a reference book for conservation managers and policymakers, a way to scan through your possible solutions and get a feel for those that are most likely to be effective. Once you have a few ideas in mind, you can follow the links to see the full evidence base for each study at conservationevidence.com, where over 5000 studies have been summarised into digestible paragraphs.

The book takes the form of discrete chapters on taxa, habitats or topics (such as ‘control of freshwater invasives’). Each chapter is split into IUCN threat categories such as ‘Agriculture’ or ‘Energy production and mining’. For each threat there are a series of interventions that could be used to tackle it, and for each of these interventions the evidence has been collated. Experts have then graded the body of the evidence over three rounds of Delphi scoring, looking at the effectiveness, certainty in the evidence (i.e., the quality and quantity of evidence available), and any harms to the target taxa. These scores combine to place each intervention in a category from ‘Beneficial’ to ‘Likely to be ineffective or harmful’. Read the rest of this entry »


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Categories : amphibian, biodiversity, birds, captive breeding, climate change, conservation, conservation biology, conservation ecology, ecology, ecosystem, ecosystem function, ecosystem services, environmental policy, extinction, fish, fragmentation, function, governance, impact, invasive species, management, protected area, research, science, threatened species

My interview with Conservation Careers

10 04 2018

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The online job-search engine and careers magazine for conservation professionals — Conservation Careers — recently published an interview with me written by Mark Thomas. Mark said that he didn’t mind if I republished the article here.

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As we walk through life we sometimes don’t know where our current path will take us. Will it be meaningful, and what steps could we take? Seeking out and talking to people who have walked far ahead of us in a line of work that we are interested in could help shape the next steps we take, and help us not make the same mistakes that could have cost us precious time.

A phrase that I love is “standing on the shoulders of giants” and this conversation has really inspired me — I hope it will do for you as well.

Corey Bradshaw is the Matthew Flinders Fellow in Global Ecology at Flinders University, and author to over 260 hundred peer-reviewed articles. His research is mainly in the area of global-change ecology, and his blog ConservationBytes critiques the science of conservation and has over 11,000 followers. He has written books, and his most recent one ‘The Effective Scientist’ will be published in March (more on this later).

What got you interested in ecology and conservation?

As a child I grew up in British Columbia, Canada, my father was a fur trapper, and we hunted everything we ate (we ate a lot of black bear). My father had lots of dead things around the house and he prepared the skins for the fur market. It was a very consumptive and decidedly non-conservation upbringing.

Ironically, I learnt early in life that some of the biggest impediments to deforestation through logging was the trapping industry, because when you cut down trees nothing that is furry likes to live there. In their own consumptive ways, the hunters were vocal and acted to protect more species possibly than what some dedicated NGOs were able to.

So, at the time, I never fully appreciated it, but not having much exposure to all things urban and the great wide world, and by spending a lot of time out in the bush, I ended up appreciating the conservation of wild things even within that consumptive mind-set. Read the rest of this entry »


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Categories : blog, conservation, conservation biology, ecology, education, environmental science, media, science, science communication, science writing, scientific publishing, scientific writing, statistics

Penguins cheated by ecosystem change

13 03 2018

Jorge Drexler sings “… I was committed not to see what I saw, but sometimes life is more complex than what it looks like …”*. This excerpt by the Oscar-winning Uruguayan singer seems to foretell the theme of this blog: how the ecological complexity of marine ecosystems can elicit false signals to their predators. Indeed, the fidelity of marine predators to certain feeding areas can turn demographically detrimental to themselves when the amount of available food shrinks. A study of jackass penguins illustrates the phenomenon in a context of overfishing and ocean warming.

CB_JackassPenguinsEcologicalTrapPhoto

Adult of jackass penguin (Spheniscus demersus) from Robben Island (South Africa) — in the inset, one of the first juveniles released with a satellite transmitter on its back. The species is ‘Endangered’ under IUCN’s criteria (28), following a recent halving of the total population currently estimated at ~ 80,000 adults. Jackass penguins are the only penguins living in Africa, and owe their common name to their vocalisations (you can hear their braying sounds here); adults are ~ 50 cm tall and weigh ~ 3 kg. Photos courtesy of Richard Sherley.

Surface temperature, dissolved oxygen, acidity and primary productivity are, by and large, the top four environmental factors driving the functionality of marine ecosystems (1). Growing scientific evidence supports the idea that anthropogenic warming of the atmosphere and the oceans correlates with this quartet (2). For instance, marine primary productivity is enhanced by increased temperatures (3), but a warmer sea surface intensifies stratification, i.e., stacked layers of seawater with contrasting physical and chemical properties.

In coastal areas experiencing ‘upwelling’ (where winds displace surface water, allowing deep water laden with nutrients to reach the euphotic zone where plankton communities feast), stratification weakens upwelling currents and, in turn, limits the growth of plankton (4) that fuels the entire trophic web, including our fisheries. The study of these complex trophic cascades is particularly cumbersome from the perspective of large marine predators because of their capacity to move long distances, from hundreds to thousands of kilometres (5), with strong implications for their conservation (6).

With those caveats in mind, Richard Sherley and colleagues satellite-tracked the movement of 54 post-fledged, juvenile jackass penguins (Spheniscus demersus) for 2-3 years (7). All individuals had been hatched in eight colonies (accounting for 80% of the global population), and were equipped with platform terminal transmitters. Jackass penguins currently nest in 28 island and mainland locations between South Africa and Namibia. Juveniles swim up to 2000 km in search of food and, when approaching adulthood, return to their native colonies where they reproduce and reside for the remainder of their lives (watch individuals swimming here).

The natural history of this species is linked to the Southern Hemisphere’s trade winds (‘alisios’ for Spanish speakers), which blow from the southeast to the tropics. In the South Atlantic, trade winds sustain the Benguela Current, the waters of which surface from some 300 m of depth and fertilise the marine ecosystems stretching from the Western coasts of South Africa to Angola (8). Read the rest of this entry »


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Categories : Africa, behaviour, birds, climate change, climate shift, coasts, decline, ecology, ecosystem, ecosystem function, fish, fisheries, food, function, harvest, impact, research, science, trophic cascades

Our global system-of-systems

28 02 2018

Complex-systems

I’ve just read an excellent paper that succinctly, eloquently, and wisely summarised the current predicament of our highly interconnected, global, complex adaptive system (i.e., our environment).

If you are new to the discussions around state shifts, hysteresis, tipping points, and system collapse, there might be a lot in the new paper by Philip Garnett of the University of York that you could find intimidating (and not just because of the complexity of the concepts he discusses). If you are more up-to-date on these discussions, I highly recommend reading this paper for distilling some of the more pertinent questions.

The essence of the paper is that our global environment (Earth) is one giant, complex system made up of interacting sub-systems. We can think of these as a giant, interconnected network of nodes and connections (often called ‘edges’) between them. If you do ecological network theory, then you know what I’m talking about.

What’s particularly fascinating to me is that Philip Garnett is not an environmental scientist; in fact, he’s a a lecturer in Operations Management and Business Analytics (although he does have a background in genetics and biology) who specialises in complex systems theory. In fact, much of his paper uses socio-economic examples of system complexity and collapse, yet the applications to environmentalism in general, and to ecological integrity in particular, are spot on.

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Categories : biodiversity, climate change, connectivity, conservation, ecology, ecosystem function, extinction, extinction debt, human overpopulation, sustainability, trophic cascades

Influential conservation ecology papers of 2017

27 12 2017

Gannet Shallow Diving 03
As I have done for the last four years (2016, 2015, 2014, 2013), here’s another retrospective list of the top 20 influential conservation papers of 2017 as assessed by experts in F1000 Prime.

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Categories : Africa, algae, Amazon, anthropocene, biodiversity, biowealth, cat, climate change, community ecology, connectivity, conservation, conservation ecology, coral reefs, decline, deforestation, drought, ecology, ecosystem, ecosystem function, ecosystem services, environmental science, eutrophication, extinction, extinction debt, fish, fragmentation, function, genetics, habitat loss, marine, pollination, toxicology

Tiny, symbiotic organisms protect corals from predation and disease

20 12 2017

hydrozoan polyp

Hydrozoan polyps living on the surface of a coral (photo credit: S. Montano)

Corals could have some unexpected allies to cope with the multi-faceted threats posed by climate change.

In a new study published today in Proceedings of the Royal Society B, Montano and colleagues show how tiny hydrozoans smaller than 1 mm and commonly found in dense colonies on the surface of hard corals (see above photo) play an important ecological role.

Visually examining ~ 2500 coral colonies in both Maldivian and Saudi Arabian reefs, the scientists searched for signs of predation, temperature-induced stress, and disease. For each colony, they also recorded the presence of symbiotic hydrozoans. They demonstrated that corals living in association with hydrozoans are much less prone to be eaten by corallivorous (i.e., ‘coral-eating’) fish and gastropods than hydrozoan-free corals.

A likely explanation for this pattern could be the deterring action of hydrozoan nematocysts (cells capable of ejecting a venomous organelle, which are the same kinds found in jellyfish tentacles). An individual hydrozoan polyp of less than 1 mm clearly cannot cope with a corallivorous fish that is a billions of times larger, yet hydrozoans can grow at high densities on the surface of corals (sometimes > 50 individuals per cm2). This creates a sort of a continuous, ‘urticating‘ carpet that can discourage fish from foraging. Read the rest of this entry »


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Categories : biodiversity, bottom-up ecology, climate change, climate shift, community ecology, conservation, conservation ecology, coral reefs, disease, ecology, ecosystem function, fish, function, health, marine, ocean, predation

Microclimates: thermal shields against global warming for small herps

22 11 2017

Thermal microhabitats are often uncoupled from above-ground air temperatures. A study focused on small frogs and lizards from the Philippines demonstrates that the structural complexity of tropical forests hosts a diversity of microhabitats that can reduce the exposure of many cold-blooded animals to anthropogenic climate warming.

Luzon forest frogs

Reproductive pair of the Luzon forest frogs Platymantis luzonensis (upper left), a IUCN near-threatened species restricted to < 5000 km2 of habitat. Lower left: the yellow-stripped slender tree lizard Lipinia pulchella, a IUCN least-concerned species. Both species have body lengths < 6 cm, and are native to the tropical forests of the Philippines. Right panels, top to bottom: four microhabitats monitored by Scheffers et al. (2), namely ground vegetation, bird’s nest ferns, phytotelmata, and fallen leaves above ground level. Photos courtesy of Becca Brunner (Platymantis), Gernot Kunz (Lipinia), Stephen Zozaya (ground vegetation) and Brett Scheffers (remaining habitats).

If you have ever entered a cave or an old church, you will be familiar with its coolness even in the dog days of summer. At much finer scales, from centimetres to millimetres, this ‘cooling effect’ occurs in complex ecosystems such as those embodied by tropical forests. The fact is that the life cycle of many plant and animal species depends on the network of microhabitats (e.g., small crevices, burrows, holes) interwoven by vegetation structures, such as the leaves and roots of an orchid epiphyte hanging from a tree branch or the umbrella of leaves and branches of a thick bush.

Much modern biogeographical research addressing the effects of climate change on biodiversity is based on macroclimatic data of temperature and precipitation. Such approaches mostly ignore that microhabitats can warm up or cool down in a fashion different from that of local or regional climates, and so determine how species, particularly ectotherms, thermoregulate (1). To illustrate this phenomenon, Brett Scheffers et al. (2) measured the upper thermal limits (typically known as ‘critical thermal maxima’ or CTmax) of 15 species of frogs and lizards native to the tropical forest of Mount Banahaw, an active volcano on Luzon (The Philippines). The > 7000 islands of this archipelago harbour > 300 species of amphibians and reptiles (see video here), with > 100 occurring in Luzon (3).

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Categories : amphibian, behaviour, biodiversity, carbon, climate change, climate shift, conservation biology, decline, ecology, extinction, frog, function, research, science, threatened species, trophic cascades, tropical

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